Gene
| Gene Model ID | pfu_aug1.0_148549.1_42775 |
|---|---|
| Locus | scaffold148549.1 : 1 ... 793 : - |
| To GenomeBrowser | scaffold148549.1:1..793 |
| Genes list of scaffold | scaffold148549.1 |
| Synonym | pfu_aug2.0_124.1_13629 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_148549.1_42775.t1 | 5 | 1 | LRR_4 | 19 | 51 | 1.5e-27 | 94.6 | 2.9e-05 | 0.072 | 12.7 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 1 | LRR_8 | 19 | 51 | 2.1e-25 | 88.2 | 2.8e-05 | 0.068 | 12.9 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 1 | LRR_1 | 19 | 38 | 1.6e-17 | 60.8 | 0.034 | 84.0 | 3.8 |
| pfu_aug1.0_148549.1_42775.t1 | 3 | 1 | LRR_9 | 20 | 99 | 5.1e-06 | 26.1 | 2.4e-05 | 0.06 | 12.8 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 1 | LRR_7 | 39 | 51 | 1.7e-10 | 39.3 | 0.27 | 670.0 | 1.3 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 2 | LRR_1 | 40 | 52 | 1.6e-17 | 60.8 | 0.27 | 670.0 | 1.0 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 2 | LRR_8 | 63 | 120 | 2.1e-25 | 88.2 | 6.4e-11 | 1.6e-07 | 30.9 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 3 | LRR_1 | 63 | 84 | 1.6e-17 | 60.8 | 3.0e-05 | 0.074 | 13.1 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 2 | LRR_7 | 63 | 78 | 1.7e-10 | 39.3 | 0.00084 | 2.1 | 8.9 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 2 | LRR_4 | 64 | 100 | 1.5e-27 | 94.6 | 2.7e-11 | 6.7e-08 | 31.9 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 3 | LRR_7 | 85 | 98 | 1.7e-10 | 39.3 | 0.0063 | 15.0 | 6.2 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 4 | LRR_1 | 86 | 106 | 1.6e-17 | 60.8 | 3.1e-05 | 0.078 | 13.0 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 3 | LRR_4 | 109 | 147 | 1.5e-27 | 94.6 | 4.3e-11 | 1.1e-07 | 31.3 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 3 | LRR_8 | 109 | 164 | 2.1e-25 | 88.2 | 1.2e-10 | 3.0e-07 | 30.0 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 5 | LRR_1 | 109 | 130 | 1.6e-17 | 60.8 | 0.00021 | 0.52 | 10.5 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 4 | LRR_7 | 109 | 124 | 1.7e-10 | 39.3 | 0.0016 | 4.0 | 8.0 |
| pfu_aug1.0_148549.1_42775.t1 | 3 | 2 | LRR_9 | 130 | 191 | 5.1e-06 | 26.1 | 0.015 | 37.0 | 3.8 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 5 | LRR_7 | 131 | 147 | 1.7e-10 | 39.3 | 0.00097 | 2.4 | 8.7 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 6 | LRR_1 | 132 | 153 | 1.6e-17 | 60.8 | 0.00036 | 0.88 | 9.8 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 4 | LRR_4 | 156 | 192 | 1.5e-27 | 94.6 | 4.9e-10 | 1.2e-06 | 27.9 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 4 | LRR_8 | 156 | 210 | 2.1e-25 | 88.2 | 5.5e-10 | 1.4e-06 | 27.9 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 7 | LRR_1 | 156 | 176 | 1.6e-17 | 60.8 | 0.00035 | 0.88 | 9.8 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 6 | LRR_7 | 156 | 170 | 1.7e-10 | 39.3 | 0.17 | 410.0 | 2.0 |
| pfu_aug1.0_148549.1_42775.t1 | 3 | 3 | LRR_9 | 161 | 247 | 5.1e-06 | 26.1 | 1.2e-05 | 0.03 | 13.8 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 8 | LRR_1 | 178 | 194 | 1.6e-17 | 60.8 | 3.5e-05 | 0.086 | 12.9 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 7 | LRR_7 | 178 | 193 | 1.7e-10 | 39.3 | 0.00017 | 0.43 | 10.9 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 5 | LRR_8 | 200 | 238 | 2.1e-25 | 88.2 | 8.3e-07 | 0.0021 | 17.7 |
| pfu_aug1.0_148549.1_42775.t1 | 5 | 5 | LRR_4 | 210 | 237 | 1.5e-27 | 94.6 | 0.0006 | 1.5 | 8.5 |
| pfu_aug1.0_148549.1_42775.t1 | 9 | 9 | LRR_1 | 225 | 237 | 1.6e-17 | 60.8 | 0.012 | 30.0 | 5.1 |
| pfu_aug1.0_148549.1_42775.t1 | 8 | 8 | LRR_7 | 225 | 237 | 1.7e-10 | 39.3 | 0.0085 | 21.0 | 5.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_148549.1_42775.t1 | gi|291241337|ref|XP_002740568.1| | PREDICTED: leucine-rich repeat protein SHOC-2-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_148549.1_42775.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_148549.1_42775.t1 atggatatgctagaagttgagaatattataaagaaagcagtaggttcaggccaagaagtgattaatctgagtcacagaaa cattggcgttttatccagcaatgttaaaaatttgacaaatgttaaacgtcttctactcaacgacaatcagattatgatgc ctccatcagaactgatatatctactaagactggaagaactggtgctaaataacaacagattgactctcctgccgagcgga attggaaacctctccaatctgacgtacctcaacctctgtcataatcccctcagcgttttatcggaagaaatctgcaaact tgttcaactacaacagctttggcttgttgattgtcaactcagtagtctccctgagaatattggacaactgacaaatctcc aaaaattaagtgtgagagaaaactacttagcacatcttccagaaagttttgtgcatcttcgaaggctgatttggttgtgt ctctctgaaaatacatttcaggaattaccggagaactttagcaaacttgaaaacttagctcatcttgatctcagtcataa tcagtttcatgaagttccaaaatgtgtgactgaactgcctgaactggcttgtctacttttgaaagccaactttgtcaaag aagttggtgatgaagcaatattagaattatcaaagcttacgaaacttgatataagggacaatgacattgatgaaaagcct gttcactggaaggtatttgtttttgattttgagtag |
|
Protein
| Protein ID | pfu_aug1.0_148549.1_42775.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_148549.1_42775.t1 MDMLEVENIIKKAVGSGQEVINLSHRNIGVLSSNVKNLTNVKRLLLNDNQIMMPPSELIYLLRLEELVLNNNRLTLLPSG IGNLSNLTYLNLCHNPLSVLSEEICKLVQLQQLWLVDCQLSSLPENIGQLTNLQKLSVRENYLAHLPESFVHLRRLIWLC LSENTFQELPENFSKLENLAHLDLSHNQFHEVPKCVTELPELACLLLKANFVKEVGDEAILELSKLTKLDIRDNDIDEKP VHWKVFVFDFE |
|