Gene
| Gene Model ID | pfu_aug1.0_14867.1_32485 |
|---|---|
| Locus | scaffold14867.1 : 1 ... 9170 : + |
| To GenomeBrowser | scaffold14867.1:1..9170 |
| Genes list of scaffold | scaffold14867.1 |
| Synonym | NA |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | titin |
| Description | Titin partial sequence. BLASTP hit to JH167841(Heterocephalus glaber). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14867.1_32485.t1 | 6 | 1 | Ig_2 | 1 | 56 | 0.0 | 190.8 | 1.9e-06 | 0.0025 | 17.9 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 1 | I-set | 2 | 56 | 0.0 | 404.0 | 1.1e-12 | 1.5e-09 | 37.5 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 1 | V-set | 5 | 53 | 1.1e-28 | 99.4 | 0.0017 | 2.3 | 8.1 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 1 | Herpes_gE | 8 | 117 | 6.4e-07 | 28.0 | 0.33 | 440.0 | -1.2 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 1 | ig | 17 | 40 | 3.4e-27 | 94.3 | 0.35 | 470.0 | 1.0 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 1 | Receptor_2B4 | 19 | 51 | 7.5e-06 | 25.8 | 0.68 | 920.0 | -0.2 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 1 | Ig_3 | 22 | 43 | 4.6e-29 | 100.6 | 0.13 | 180.0 | 2.7 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 2 | I-set | 94 | 183 | 0.0 | 404.0 | 2.7e-23 | 3.7e-20 | 71.5 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 2 | Ig_2 | 103 | 182 | 0.0 | 190.8 | 1.4e-09 | 1.9e-06 | 27.8 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 2 | Ig_3 | 104 | 170 | 4.6e-29 | 100.6 | 2.9e-05 | 0.039 | 14.4 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 2 | V-set | 106 | 171 | 1.1e-28 | 99.4 | 0.00061 | 0.83 | 9.5 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 2 | ig | 109 | 168 | 3.4e-27 | 94.3 | 1.5e-06 | 0.0021 | 18.1 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 1 | C2-set_2 | 112 | 138 | 5.4e-17 | 61.4 | 0.0029 | 3.9 | 7.4 |
| pfu_aug1.0_14867.1_32485.t1 | 4 | 1 | C1-set | 124 | 141 | 1.0e-05 | 25.4 | 0.42 | 570.0 | 0.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 2 | Receptor_2B4 | 131 | 175 | 7.5e-06 | 25.8 | 0.42 | 570.0 | 0.4 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 3 | I-set | 194 | 283 | 0.0 | 404.0 | 1.1e-27 | 1.5e-24 | 85.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 3 | Ig_2 | 201 | 279 | 0.0 | 190.8 | 4.9e-15 | 6.6e-12 | 45.3 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 3 | Ig_3 | 202 | 270 | 4.6e-29 | 100.6 | 3.7e-08 | 5.0e-05 | 23.7 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 3 | V-set | 202 | 278 | 1.1e-28 | 99.4 | 9.5e-12 | 1.3e-08 | 34.7 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 2 | C2-set_2 | 206 | 236 | 5.4e-17 | 61.4 | 4.4e-05 | 0.06 | 13.2 |
| pfu_aug1.0_14867.1_32485.t1 | 4 | 2 | C1-set | 206 | 256 | 1.0e-05 | 25.4 | 0.014 | 19.0 | 5.3 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 3 | ig | 208 | 268 | 3.4e-27 | 94.3 | 7.1e-08 | 9.6e-05 | 22.4 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 2 | Herpes_gE | 241 | 289 | 6.4e-07 | 28.0 | 0.03 | 40.0 | 2.2 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 3 | Receptor_2B4 | 245 | 278 | 7.5e-06 | 25.8 | 0.13 | 170.0 | 2.1 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 4 | I-set | 299 | 389 | 0.0 | 404.0 | 2.2e-22 | 2.9e-19 | 68.7 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 4 | V-set | 307 | 375 | 1.1e-28 | 99.4 | 1.6e-05 | 0.022 | 14.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 4 | Ig_2 | 308 | 389 | 0.0 | 190.8 | 8.5e-13 | 1.2e-09 | 38.2 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 4 | Ig_3 | 309 | 375 | 4.6e-29 | 100.6 | 5.1e-08 | 6.9e-05 | 23.2 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 4 | ig | 313 | 370 | 3.4e-27 | 94.3 | 2.7e-08 | 3.7e-05 | 23.7 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 3 | C2-set_2 | 313 | 343 | 5.4e-17 | 61.4 | 0.00036 | 0.49 | 10.3 |
| pfu_aug1.0_14867.1_32485.t1 | 4 | 3 | C1-set | 313 | 343 | 1.0e-05 | 25.4 | 0.049 | 66.0 | 3.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 4 | Receptor_2B4 | 353 | 382 | 7.5e-06 | 25.8 | 0.0022 | 2.9 | 7.8 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 3 | Herpes_gE | 355 | 459 | 6.4e-07 | 28.0 | 1.8e-06 | 0.0024 | 16.1 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 5 | Ig_3 | 435 | 512 | 4.6e-29 | 100.6 | 3.6e-05 | 0.049 | 14.1 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 5 | V-set | 441 | 507 | 1.1e-28 | 99.4 | 1.3e-05 | 0.017 | 15.0 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 5 | I-set | 441 | 525 | 0.0 | 404.0 | 2.8e-21 | 3.8e-18 | 65.1 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 5 | Ig_2 | 441 | 513 | 0.0 | 190.8 | 6.1e-10 | 8.2e-07 | 29.0 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 5 | ig | 450 | 507 | 3.4e-27 | 94.3 | 0.014 | 18.0 | 5.5 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 4 | C2-set_2 | 451 | 491 | 5.4e-17 | 61.4 | 0.00065 | 0.87 | 9.5 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 5 | Receptor_2B4 | 487 | 519 | 7.5e-06 | 25.8 | 0.087 | 120.0 | 2.6 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 4 | Herpes_gE | 488 | 536 | 6.4e-07 | 28.0 | 0.018 | 25.0 | 2.9 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 6 | I-set | 551 | 575 | 0.0 | 404.0 | 0.2 | 270.0 | 1.4 |
| pfu_aug1.0_14867.1_32485.t1 | 7 | 7 | I-set | 638 | 727 | 0.0 | 404.0 | 9.3e-22 | 1.3e-18 | 66.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 6 | Ig_2 | 644 | 722 | 0.0 | 190.8 | 7.1e-09 | 9.6e-06 | 25.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 6 | V-set | 646 | 718 | 1.1e-28 | 99.4 | 1.0e-05 | 0.014 | 15.3 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 6 | Ig_3 | 651 | 714 | 4.6e-29 | 100.6 | 0.00012 | 0.16 | 12.5 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 6 | ig | 655 | 710 | 3.4e-27 | 94.3 | 1.9e-05 | 0.025 | 14.6 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 5 | C2-set_2 | 662 | 683 | 5.4e-17 | 61.4 | 5.4e-05 | 0.073 | 12.9 |
| pfu_aug1.0_14867.1_32485.t1 | 4 | 4 | C1-set | 665 | 698 | 1.0e-05 | 25.4 | 0.0013 | 1.7 | 8.6 |
| pfu_aug1.0_14867.1_32485.t1 | 6 | 6 | Receptor_2B4 | 669 | 722 | 7.5e-06 | 25.8 | 0.036 | 49.0 | 3.9 |
| pfu_aug1.0_14867.1_32485.t1 | 5 | 5 | Herpes_gE | 693 | 733 | 6.4e-07 | 28.0 | 0.21 | 280.0 | -0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14867.1_32485.t1 | gi|324499431|gb|ADY39755.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_14867.1_32485.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14867.1_32485.t1 gtaccatgacggtgaggagatccaggagaagaagaatgtacacatgacgtataaagacaattttggttctctgttaataa acgaccttgaaatagaggacgcaggaaaaatacggtgtaaagccagtaacgaacatggagaagtctccacaaccgctaga ctgactgtagaagatctgaagcacaggagaaagagaaaggcaaaggaggcagaaattggagcgaaactgaaactggacag acaggagtatgaccgccgtgtcaaggacactaatgtaccaccgaccttcaccttgccactcgtagaccaagtcaggaaag tgggagagactgtagaactcactgtcactgtgacatgtcgtccagaacctgatgttttctggtaccataacaacaagaaa atcaggtcatctgagagatatgaccttgaacatatcaagggtgtgtatcgcctaatcatccatgaactggaacaaggcga cgcgggtcagtggagatgtgaggccaacaatgcctatggacatgccatgtgctcctgtgaactcaaggtcatagagacca tcccagagggagcatcatcaccaaagttcaccaaatgtctggaggacgtcacagtggaggagggtagcagtgtgaccttg gaatgcaaattcaaaggtcatcctaatccacaaatagaatggtacaaagacaggaagttgatacgttcaggcagacacta cagaatcatgtcagatgaggaccatagcacactaacgatccacgactcgtacaccaatgatacgggacgatacatgtgtc gtgctgttaatatggtgggaagcactaccaccgaatcacacgtcaagatacaaagtacagagagagagggcacaccagag cttgacttcagtcgacctcactttaaacgtcccctacaggacatcagtgtaacggctggagaggaggttaacttcacgtg ccttgttgcaggtcgaccactcccaacattcaaatggcagaaagacggttctgacgtcactgagaacaagcgtatttata tcggaagcgattcggacggaggcgcggagctgatgatccgtagtgccagaaccagcgattctgggttatacagcgttata gctcagagtactgctggtcgtactaaatgctccgcctacctcagggttaaagccaagtccaagtcctcctcaccaccaga aagccccgccctgtccatggatgaagcccctctaacctgggcacagcgtacagagaaaagctatgaacgtgccaagccta aggagataccaggaggacgtaggccacacttctcactggctctgcctaaagtggtagaactagacgagggtgacaagtta catctggactgtactgtagatgggtggcccagaccagtcttgacctggcataaaggacaccgtgacctgagctatgatta ccgtcaccgcaccaccagcttccagaacatgcactcgctagaaatccaggaagtcatggcaacagacgctggagaatata tcgccaaggcaaccaacgcctgtggtactgccgaggtcaaatgtcaaatcaaggtcaacaaacgtatggccagaagggca agtgctgatatttcggttcaagatgcccaaaaagcagcagctcctttcttcatcaaacaccttcccaagtctatggatgt tatgaagggatacaatatccagtacgactgtattgtagaaggggaagtaactctaatcaaacataaacgctcggaaatga aaactgtcaaagagacattagaattcagtgaatttgaaggaaattatcgtcagatcccatccatgtccattcccaccatg atgggtgccacagcaacgatacctatgtccggcccacgaggggcagggaaacagaaaaaggcgaaatgctcgccgcggtt tatagaggaagtagaggaacaaacgttgaggacaggaagtattgctactctgtctgccgtagtggaggctgagccggaag ctgatatctcatggtacaaggacggcaaagaactgaaggacagcaataaatacgagatgttttttgaggacggagcctac cacttagaagtttacgatacagacctgaccgatactggcatgtataaatgtatagcaaccaacgaaatgggctctgccca aagtcgggctaaagtcacaatactaggtaaaactgaatgggaggatcgtattaaacatagacatagacttaattag |
|
Protein
| Protein ID | pfu_aug1.0_14867.1_32485.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14867.1_32485.t1 YHDGEEIQEKKNVHMTYKDNFGSLLINDLEIEDAGKIRCKASNEHGEVSTTARLTVEDLKHRRKRKAKEAEIGAKLKLDR QEYDRRVKDTNVPPTFTLPLVDQVRKVGETVELTVTVTCRPEPDVFWYHNNKKIRSSERYDLEHIKGVYRLIIHELEQGD AGQWRCEANNAYGHAMCSCELKVIETIPEGASSPKFTKCLEDVTVEEGSSVTLECKFKGHPNPQIEWYKDRKLIRSGRHY RIMSDEDHSTLTIHDSYTNDTGRYMCRAVNMVGSTTTESHVKIQSTEREGTPELDFSRPHFKRPLQDISVTAGEEVNFTC LVAGRPLPTFKWQKDGSDVTENKRIYIGSDSDGGAELMIRSARTSDSGLYSVIAQSTAGRTKCSAYLRVKAKSKSSSPPE SPALSMDEAPLTWAQRTEKSYERAKPKEIPGGRRPHFSLALPKVVELDEGDKLHLDCTVDGWPRPVLTWHKGHRDLSYDY RHRTTSFQNMHSLEIQEVMATDAGEYIAKATNACGTAEVKCQIKVNKRMARRASADISVQDAQKAAAPFFIKHLPKSMDV MKGYNIQYDCIVEGEVTLIKHKRSEMKTVKETLEFSEFEGNYRQIPSMSIPTMMGATATIPMSGPRGAGKQKKAKCSPRF IEEVEEQTLRTGSIATLSAVVEAEPEADISWYKDGKELKDSNKYEMFFEDGAYHLEVYDTDLTDTGMYKCIATNEMGSAQ SRAKVTILGKTEWEDRIKHRHRLN |
|