Gene
| Gene Model ID | pfu_aug1.0_14887.1_32490 |
|---|---|
| Locus | scaffold14887.1 : 17636 ... 20336 : - |
| To GenomeBrowser | scaffold14887.1:17636..20336 |
| Genes list of scaffold | scaffold14887.1 |
| Synonym | pfu_aug2.0_194.1_13762 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Chitinase-like protein |
| Description | Family 18 chitinase, best hit to BLAST CCE46155.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14887.1_32490.t1 | 1 | 1 | Glyco_hydro_18 | 10 | 190 | 4.30002e-41 | 141.5 | 9.80909e-45 | 6.79994e-41 | 140.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14887.1_32490.t1 | gi|92110438|emb|CAI96029.1| | Clp1 protein [Crassostrea gigas] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 2 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_14887.1_32490.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14887.1_32490.t1 atggatatagaagagacccctgatgacaaatgggacttgtgtctgtctgtagctgtagatccatcagaatacatgagctc aagttcctacgaaattgacaaaattacaagaaatatagatttttacaacctgaaaatgtacgattttcacggtcattgga acgatccggtacttgtgaaacatcactcagctctgacgtcatcaagtagcttaccaagtgtaaatgagctagcgaagatg tgggtgcagagaggtgttcctaaaagaaaaatcaacatcggtattccctttttcggacgatcttacagaacagctcagcc aaatgccaccatcggtgatccggcgcttggtcctggatcggatgggggaattggtataccggtctctaatatctgtcatc tggttcgaggtggaacaaaagaatattatttgaaagaagaaaatgttccatttattgtgaatggcgatgagtgggttggc tttgataatcctcgaagtgtaagagaaaaggctgccctggtgaagaataacagactaggtggagtcatggtttgggcaat agacatggacgaccattcaggatggtgtggagagaagttccccctaatgatgtcgatcatccacggcctcggggaatttg tagattacatgtccgatacactagaggcagaaagggaaatgatcaacaagaaaatacggaaagctgcacgtgaaatctcc tattattcagataaagggaacttcacaatggcaaagagaatggaggataagttgaatcatttgaaggatcatctatctac agttcaggcccatcagtcagtccaatgggcaaacgttcaatatagtgcaggccttggaggtaaaccgttaccaagtaaag acactccatcctggtcatggtag |
|
Protein
| Protein ID | pfu_aug1.0_14887.1_32490.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14887.1_32490.t1 MDIEETPDDKWDLCLSVAVDPSEYMSSSSYEIDKITRNIDFYNLKMYDFHGHWNDPVLVKHHSALTSSSSLPSVNELAKM WVQRGVPKRKINIGIPFFGRSYRTAQPNATIGDPALGPGSDGGIGIPVSNICHLVRGGTKEYYLKEENVPFIVNGDEWVG FDNPRSVREKAALVKNNRLGGVMVWAIDMDDHSGWCGEKFPLMMSIIHGLGEFVDYMSDTLEAEREMINKKIRKAAREIS YYSDKGNFTMAKRMEDKLNHLKDHLSTVQAHQSVQWANVQYSAGLGGKPLPSKDTPSWSW |
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