Gene
| Gene Model ID | pfu_aug1.0_14895.1_10758 |
|---|---|
| Locus | scaffold14895.1 : 12496 ... 25651 : + |
| To GenomeBrowser | scaffold14895.1:12496..25651 |
| Genes list of scaffold | scaffold14895.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | shematrin-6 |
| Description | reciprocal BLASTN hit to NCBI Accession AB244424 |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14895.1_10758.t1 | gi|93102309|dbj|BAE93438.1| | shematrin-6 [Pinctada fucata] | 4.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_14895.1_10758.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14895.1_10758.t1 atgttgcgatttgcctgcatcgccttatttgttgctctcgccaatgctggaggcagcagcaataaatatccatcagtaat tgacctaggaacgtccgtcgctcctgcaaccagctcagttgcaccaggaataattggatctggcatcggatctattggag gtgtcggagttctaccagtgggaggagtcggcattggacccgtgggaggagtcggcattggacccgtgggaggaatcgga gttggaccagtattgggttatggcggacctgatgtcgccaccttcagaggaaacaccttcggaacattggcaactggaac aattaactcacttactggaggctactccgtaggatatggtggaaatctagcattaagtggaggactcagtctcggtcttg gaggtgctgttggtcttggaggtgctggtggtctcggcgttcttggaggctacggtgtaggacctgtaggggttggagca gtcggaggaggagtaggagccatcgggggcgttggctcaattggcgtaggaggtgtcggcggcggagttggcatccttgg aggtggtggtcttggcggcaatgttgcttcattccaaggacatacatacggaccaattgcaactggttcaatcacctcga acacaggaggtgtaattccatatggtggaatcataggtctatcccgtggcattggaccttatggactcggatctggaata ggcggtggtgtcttagctggacctggtttaggtggc |
|
Protein
| Protein ID | pfu_aug1.0_14895.1_10758.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14895.1_10758.t1 MLRFACIALFVALANAGGSSNKYPSVIDLGTSVAPATSSVAPGIIGSGIGSIGGVGVLPVGGVGIGPVGGVGIGPVGGIG VGPVLGYGGPDVATFRGNTFGTLATGTINSLTGGYSVGYGGNLALSGGLSLGLGGAVGLGGAGGLGVLGGYGVGPVGVGA VGGGVGAIGGVGSIGVGGVGGGVGILGGGGLGGNVASFQGHTYGPIATGSITSNTGGVIPYGGIIGLSRGIGPYGLGSGI GGGVLAGPGLGG |
|