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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_149.1_65264
Locus scaffold149.1 : 47887 ... 52135 : -
To GenomeBrowser scaffold149.1:47887..52135
Genes list of scaffold scaffold149.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_149.1_65264.t1 2 1 LRR_8 28 76 3.5e-11 42.6 2.2e-10 2.7e-07 30.2
pfu_aug1.0_149.1_65264.t1 2 1 LRR_4 29 61 6.8e-16 57.4 4.4e-09 5.4e-06 25.8
pfu_aug1.0_149.1_65264.t1 3 1 LRR_1 43 63 3.5e-09 35.4 3.9e-05 0.048 13.6
pfu_aug1.0_149.1_65264.t1 2 2 LRR_4 65 104 6.8e-16 57.4 8.6e-11 1.1e-07 31.3
pfu_aug1.0_149.1_65264.t1 3 2 LRR_1 66 82 3.5e-09 35.4 0.00019 0.24 11.5
pfu_aug1.0_149.1_65264.t1 2 2 LRR_8 81 102 3.5e-11 42.6 7.8e-05 0.097 12.4
pfu_aug1.0_149.1_65264.t1 3 3 LRR_1 87 103 3.5e-09 35.4 0.00085 1.1 9.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_149.1_65264.t1 gi|198435195|ref|XP_002130354.1| PREDICTED: leucine-rich repeat-containing protein 49 [Ciona intestinalis] 1.0e-25

Transcript
Transcript IDpfu_aug1.0_149.1_65264.t1
Definition-
>pfu_aug1.0_149.1_65264.t1
atgtggcccccttgggactcttgtttaaaaaagcttttattttataccataacatttgacctagtcaccttgaccttctt
caaacaatctagaataaagaaaattgagaatttggataatctagtcaaactggatgtgttggatctccatggtaaccaga
tatcaaccatagagaacctgagtcatttgagtgaattacgggtgttgaatttggcaggtaaccaaattgtccacgtagat
aacttagccggcatggattcattggcagagcttaaccttaggcgtaaccgcattaaaactgtgtcagttttcagataa

Protein
Protein IDpfu_aug1.0_149.1_65264.t1
Definition-
>pfu_aug1.0_149.1_65264.t1
MWPPWDSCLKKLLFYTITFDLVTLTFFKQSRIKKIENLDNLVKLDVLDLHGNQISTIENLSHLSELRVLNLAGNQIVHVD
NLAGMDSLAELNLRRNRIKTVSVFR

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