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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_14930.1_46816
Locus scaffold14930.1 : 434 ... 17395 : -
To GenomeBrowser scaffold14930.1:434..17395
Genes list of scaffold scaffold14930.1
Synonym pfu_aug2.0_2397.1_25411

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_14930.1_46816.t1 1 1 vATP-synt_E 19 79 1.0e-16 60.8 7.1e-20 1.3e-16 60.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_14930.1_46816.t1 gi|157131212|ref|XP_001655825.1| AAEL012035-PA [Aedes aegypti] 2.0e-24

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_14930.1_46816.t1
Definition-
>pfu_aug1.0_14930.1_46816.t1
atgacctttaaaatcaatagggttcttcctcttgacatcaagcacatgatggccttcattgaacaagaagccaatgaaaa
agccgaggaaattgacgcaaaggcagaggaagaatttaacatagagaaaggtcgtcttgtacagcaacagagagtgaaaa
ttatggagtattatgaaaggaaagaaaaacaagtagaattacagaaaaagataaaaaaagataaaaatgaaaataagtca
tttaatgtatatggatgctgtcatatccatggaattgacccttccaaacgcgagaaaaaattgagaaattccatgacgtc
gcgatgcaatttcgatgtttga

Protein
Protein IDpfu_aug1.0_14930.1_46816.t1
Definition-
>pfu_aug1.0_14930.1_46816.t1
MTFKINRVLPLDIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRVKIMEYYERKEKQVELQKKIKKDKNENKS
FNVYGCCHIHGIDPSKREKKLRNSMTSRCNFDV

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