Gene
| Gene Model ID | pfu_aug1.0_14979.1_25360 |
|---|---|
| Locus | scaffold14979.1 : 1 ... 3885 : - |
| To GenomeBrowser | scaffold14979.1:1..3885 |
| Genes list of scaffold | scaffold14979.1 |
| Synonym | pfu_aug2.0_8582.1_09678 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14979.1_25360.t1 | 2 | 1 | zf-C3HC4_3 | 12 | 63 | 1.5e-06 | 27.7 | 1.7e-09 | 1.5e-06 | 27.7 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 1 | zf-RING_2 | 13 | 59 | 1.3e-07 | 31.2 | 1.5e-10 | 1.3e-07 | 31.2 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 1 | zf-C3HC4 | 14 | 58 | 3.1e-09 | 36.3 | 3.6e-12 | 3.1e-09 | 36.3 |
| pfu_aug1.0_14979.1_25360.t1 | 1 | 1 | zf-C3HC4_2 | 14 | 58 | 3.0e-08 | 33.5 | 3.5e-11 | 3.0e-08 | 33.5 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 1 | zf-RING_5 | 14 | 60 | 4.9e-06 | 26.1 | 5.6e-09 | 4.9e-06 | 26.1 |
| pfu_aug1.0_14979.1_25360.t1 | 1 | 1 | zf-C3HC4_4 | 14 | 58 | 6.3e-06 | 25.9 | 7.2e-09 | 6.3e-06 | 25.9 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 2 | zf-C3HC4_3 | 97 | 132 | 1.5e-06 | 27.7 | 0.2 | 170.0 | 1.9 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 1 | zf-B_box | 97 | 143 | 4.0e-06 | 26.6 | 8.9e-07 | 0.00078 | 19.2 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 2 | zf-C3HC4 | 99 | 133 | 3.1e-09 | 36.3 | 0.21 | 190.0 | 1.8 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 2 | zf-RING_2 | 99 | 132 | 1.3e-07 | 31.2 | 0.59 | 510.0 | 0.5 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 2 | zf-RING_5 | 99 | 126 | 4.9e-06 | 26.1 | 0.014 | 12.0 | 5.7 |
| pfu_aug1.0_14979.1_25360.t1 | 2 | 2 | zf-B_box | 159 | 190 | 4.0e-06 | 26.6 | 5.5e-07 | 0.00048 | 19.9 |
Transcript
| Transcript ID | pfu_aug1.0_14979.1_25360.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14979.1_25360.t1 atgaccacggcggtagacaagaaggaagatttgacaacttgttcaatttgttttgagacgtttaaaaaaccaaaacattt tccgtgtttacatagtttttgtgaaggatgtatacaaacttatattacaaagacttttgagaaagctaagggcggggtta attgtcctctttgtcggacgttcgtatcgaaaccggaagatatcacagttgaggaatggtcgacaaaactacctacaaat catatattggtgagtcttattgacttaaatgaaacaaaatcaggtcagaaactttgtgcggcatgttcaagggaaaacga aaccgaaaatgccttttcgtggtgtgccaactgtagcgaggccctttgtaaggcatgtgatcgaagtcatcggaggagta aagcttcatcaaatcataaactgatcgaattaggagaggatacctctaaagatattcccttgtaccatgctgacgtattt tgtactgaacatccaggaaagaaagtagaagcgtattgcaacgaccactcaaccgtatgctgtatgacatgcgtaatttt aaaacacagaaaatgtgacaatgttggatcaattgaagatgcggccgaagagaaaaagaaatcaaaggaaatacaagaat tttcacaaaacctccaaagtctgaaagcgtctttggagaaattgtgcaaaaacaggacagaaaacttgaagacatttgaa aacgatattaaaatgatgagagcggacgttgaaactttattcaagcagctttccgaccacttaaacaaactaaaaacaaa cattacatccgagatatctaaggttgaaaaagaaatcaaaacagaggtagagagtgagcattttgaaatgaagtgcagaa ttcccgcagtagaaaacgacctgtccttatttgagaccaacatgaagcacgccccatcagcgcaattcatacaagcaatg gaaaatttagagaagcaaaaagaagtactagaaaactttgttagagatcaaagtcaaaatctcagagaaataaaagttac tttcaaagcgaacgaaaaactactggaactgagtagagtgatacaggaatgtggagaagtgaaagtcagtagaacaaact gtgcaccccagcattctgttatcaaaaaggtcaacatgctgacagcagtacccactcttacatcaaaagttgaaacaggc tttggtgtgagaggaatagctttattagataatggaaaagtagtactttcaagtgataacaaaagtatggagttgcggga tcctcaatgttccatggtactctcatatttggcattaccaggagattcttggggaatcaagatgaccagtgacacagagg gcgctgtagctgtagaacgatacggattggtcctattcaaaatacaaaacaatcagatagtaaagataagaaaaatgaag acagacgtgaatgcagactttgtatatcatcatggtctatactatgtagggtgcgataacaaaatgactgtttatgattg caactatcgtaaagttagagacatatcagtgaataccaaagtgagctacatgtgtttacgtggtgacaacgcgctttgtt atacagcattcaataaaactacttttgaaaaatctttgtactgtgttcgtatggatggttcctcggtgttcacatactca catgacaaacttcgcgatgcgtcaggtgtcactgtggatcattccggtcatatatatgtatgtgatatctattacgcaaa taagagggtgcatcagctaagtcatgacgggaagctacaaaggattatatttgacaatctacctgctcaaccttactgca taagctttaatactaaaggtgacaaggctgtgatcggatgtgatggcgcagttctcatgtacgatataaaataa |
|
Protein
| Protein ID | pfu_aug1.0_14979.1_25360.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14979.1_25360.t1 MTTAVDKKEDLTTCSICFETFKKPKHFPCLHSFCEGCIQTYITKTFEKAKGGVNCPLCRTFVSKPEDITVEEWSTKLPTN HILVSLIDLNETKSGQKLCAACSRENETENAFSWCANCSEALCKACDRSHRRSKASSNHKLIELGEDTSKDIPLYHADVF CTEHPGKKVEAYCNDHSTVCCMTCVILKHRKCDNVGSIEDAAEEKKKSKEIQEFSQNLQSLKASLEKLCKNRTENLKTFE NDIKMMRADVETLFKQLSDHLNKLKTNITSEISKVEKEIKTEVESEHFEMKCRIPAVENDLSLFETNMKHAPSAQFIQAM ENLEKQKEVLENFVRDQSQNLREIKVTFKANEKLLELSRVIQECGEVKVSRTNCAPQHSVIKKVNMLTAVPTLTSKVETG FGVRGIALLDNGKVVLSSDNKSMELRDPQCSMVLSYLALPGDSWGIKMTSDTEGAVAVERYGLVLFKIQNNQIVKIRKMK TDVNADFVYHHGLYYVGCDNKMTVYDCNYRKVRDISVNTKVSYMCLRGDNALCYTAFNKTTFEKSLYCVRMDGSSVFTYS HDKLRDASGVTVDHSGHIYVCDIYYANKRVHQLSHDGKLQRIIFDNLPAQPYCISFNTKGDKAVIGCDGAVLMYDIK |
|