Gene
| Gene Model ID | pfu_aug1.0_14996.1_54131 |
|---|---|
| Locus | scaffold14996.1 : 1 ... 27213 : + |
| To GenomeBrowser | scaffold14996.1:1..27213 |
| Genes list of scaffold | scaffold14996.1 |
| Synonym | pfu_aug2.0_100.1_00230 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_14996.1_54131.t1 | 7 | 1 | zf-C2H2 | 62 | 70 | 3.7e-13 | 48.9 | 0.17 | 160.0 | 2.9 |
| pfu_aug1.0_14996.1_54131.t1 | 6 | 1 | zf-H2C2_2 | 63 | 86 | 0.0 | 167.9 | 8.6e-12 | 7.9e-09 | 35.3 |
| pfu_aug1.0_14996.1_54131.t1 | 7 | 2 | zf-C2H2 | 76 | 95 | 3.7e-13 | 48.9 | 1.1e-05 | 0.01 | 16.1 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 1 | zf-H2C2_5 | 76 | 95 | 5.2e-09 | 35.8 | 0.00016 | 0.15 | 12.3 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 1 | zf-C2H2_4 | 76 | 98 | 1.9e-07 | 30.9 | 6.9e-05 | 0.064 | 13.6 |
| pfu_aug1.0_14996.1_54131.t1 | 6 | 2 | zf-H2C2_2 | 90 | 113 | 0.0 | 167.9 | 2.0e-08 | 1.8e-05 | 24.7 |
| pfu_aug1.0_14996.1_54131.t1 | 7 | 3 | zf-C2H2 | 104 | 120 | 3.7e-13 | 48.9 | 0.0047 | 4.3 | 7.8 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 2 | zf-H2C2_5 | 104 | 120 | 5.2e-09 | 35.8 | 0.033 | 30.0 | 5.0 |
| pfu_aug1.0_14996.1_54131.t1 | 6 | 3 | zf-H2C2_2 | 124 | 135 | 0.0 | 167.9 | 5.2e-06 | 0.0049 | 17.1 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 2 | zf-C2H2_4 | 132 | 154 | 1.9e-07 | 30.9 | 0.026 | 24.0 | 5.5 |
| pfu_aug1.0_14996.1_54131.t1 | 7 | 4 | zf-C2H2 | 138 | 154 | 3.7e-13 | 48.9 | 0.0064 | 6.0 | 7.4 |
| pfu_aug1.0_14996.1_54131.t1 | 6 | 4 | zf-H2C2_2 | 146 | 170 | 0.0 | 167.9 | 3.7e-12 | 3.4e-09 | 36.5 |
| pfu_aug1.0_14996.1_54131.t1 | 7 | 5 | zf-C2H2 | 160 | 185 | 3.7e-13 | 48.9 | 0.0075 | 6.9 | 7.2 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 3 | zf-H2C2_5 | 160 | 185 | 5.2e-09 | 35.8 | 0.00046 | 0.42 | 10.9 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 3 | zf-C2H2_4 | 160 | 185 | 1.9e-07 | 30.9 | 0.0022 | 2.0 | 8.9 |
| pfu_aug1.0_14996.1_54131.t1 | 6 | 5 | zf-H2C2_2 | 177 | 201 | 0.0 | 167.9 | 8.6e-12 | 8.0e-09 | 35.3 |
| pfu_aug1.0_14996.1_54131.t1 | 7 | 6 | zf-C2H2 | 191 | 213 | 3.7e-13 | 48.9 | 1.0e-07 | 9.7e-05 | 22.4 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 4 | zf-H2C2_5 | 191 | 213 | 5.2e-09 | 35.8 | 1.5e-06 | 0.0014 | 18.7 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 4 | zf-C2H2_4 | 191 | 213 | 1.9e-07 | 30.9 | 1.6e-06 | 0.0015 | 18.7 |
| pfu_aug1.0_14996.1_54131.t1 | 6 | 6 | zf-H2C2_2 | 205 | 229 | 0.0 | 167.9 | 4.0e-13 | 3.7e-10 | 39.5 |
| pfu_aug1.0_14996.1_54131.t1 | 7 | 7 | zf-C2H2 | 219 | 230 | 3.7e-13 | 48.9 | 0.016 | 15.0 | 6.1 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 5 | zf-H2C2_5 | 219 | 228 | 5.2e-09 | 35.8 | 0.0056 | 5.2 | 7.5 |
| pfu_aug1.0_14996.1_54131.t1 | 5 | 5 | zf-C2H2_4 | 219 | 230 | 1.9e-07 | 30.9 | 0.42 | 390.0 | 1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_14996.1_54131.t1 | gi|327289612|ref|XP_003229518.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| >Adult tissues | |
| maleGonad | 3 |
Transcript
| Transcript ID | pfu_aug1.0_14996.1_54131.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14996.1_54131.t1 gatcaaagaaaaagaaaaacagacaagctttgaaacatttgaaaaagatgaggatgctaaaagtcaaatagcacataaac cggctcaaactgcaatgctcacctcgacgaagtggagggggggcttatgctatcaccccatcgtcggtgtcagcgtccgc attatagttactgctgtactaatgaaactcaatgcacatcagaggacacacacaggagagaagccttataggtgtgatga gtgtgggtatagaactactcagctgagtgctctcaagacacatcagtggacacacacagtggagaagtcttataagtgtt atgagtgtgggtatagtactgctgtacagagtactctcaagacaaacaagaggacacacacaggagagaagccttataag tgtgatgagtgggggtatagtactgctcgtcttaatgctctcaagatgcatcaaaggactcacacaggagagaagccata taagtgtgatgagtgtgggtatagtactgctcgtcttaatcatgttaatgctctcaagatacatcaaaggactcacacag gagagaagccttataagtgtgatgagtgtgggtataatactactcagcttggtgatctcaagagacatcagaggacacac acaggagagaagccttataagtgtgatgagtgtgggtatagtactgctcagcttgaagacacgcagaaggatatccatga tcaagttctgtcgaatatttag |
|
Protein
| Protein ID | pfu_aug1.0_14996.1_54131.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_14996.1_54131.t1 IKEKEKQTSFETFEKDEDAKSQIAHKPAQTAMLTSTKWRGGLCYHPIVGVSVRIIVTAVLMKLNAHQRTHTGEKPYRCDE CGYRTTQLSALKTHQWTHTVEKSYKCYECGYSTAVQSTLKTNKRTHTGEKPYKCDEWGYSTARLNALKMHQRTHTGEKPY KCDECGYSTARLNHVNALKIHQRTHTGEKPYKCDECGYNTTQLGDLKRHQRTHTGEKPYKCDECGYSTAQLEDTQKDIHD QVLSNI |
|