Gene
| Gene Model ID | pfu_aug1.0_15105.1_68820 |
|---|---|
| Locus | scaffold15105.1 : 7396 ... 13622 : + |
| To GenomeBrowser | scaffold15105.1:7396..13622 |
| Genes list of scaffold | scaffold15105.1 |
| Synonym | pfu_aug2.0_1719.1_31864 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | RPE65 superfamily |
| Description | Highest blast hit to YP_003391902.1Carotenoid oxygenase [Conexibacter woesei DSM 14684] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15105.1_68820.t1 | 1 | 1 | RPE65 | 12 | 475 | 0.0 | 276.2 | 0.0 | 0.0 | 276.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_15105.1_68820.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15105.1_68820.t1 atggaaaattatcctctaaaatttgagaaaccgctcccaaaatggctgaaaggaactctgttgaggaatggcccggggcg ttttggtgtgggtgagcggaattttaccaatcttctcgatggtttcgccaaaggagttagctggaatttccccggggacg gttcatcgtacttctccacaaaatttctactgtcgtcctgctacaacgattccataaaagcagacgacatagccacgtac ctaactatagcccccgtgaacccgcctttcacgttagaacaaaaattcaaggctttgtggaggaatatggacaatttgaa cgtaaatgtattcaacttcacttcagatttagtggttttaaacgatgtttggacactatatactatagaccgcagacgct tagagcttttggagcgtgtcgacgcacaacttcccggaacttatttgggatttccctatatgagtcatatatcgactgcg catcctctaccggaagccggaaccggaaatcacatcacctttatcgcaagtatcgctttattaccaggatttcgacacaa attgactcttgtacgcgttcagtcaacaaagagaagagaaataattgcccagtggcatatcaaacagatttcgtacatgc attcattttccgtctcgcaaaattacgctttattgatagcgagtccttattacatagactttaaccgaatgctaagaaat atgaatatcggaaaagccatgaaatgggaaaacgatgaaccgtctacaatttttgttgttcatttgaaaacgggtagagt acagtcgtttgactcggaaacaatgtttactatgcatcacgtgaatgcatttgaaatcgacacgtttcgtctggcgatgg atgtaatcgcttacaaaaaagccaattcgttcagttctatctcactgagtgtattaagaaactctaccttacgggacgca gcggcattaccgtcaaaactgaagcgatacatcgtgaatcttaaaacaggcaaagtgtccgtgaaagtgtttcggaattc gtctatacaacccgagacagcccaaattgaactcccgacaatcaacgaaaaataccgatctaagagatactgcttcgcat atacagtgctatataaagcggacaataaaagctacagcaacatggctataatgaagaaagacttatgtcacaagggcggg gcttcaaaggaccaatcatggagcttacgacatcattacgtcaacgaggcgtggtttgtcccgcgtgaagggggtgtggc cgaggacgacgggttgctgctgtttccaatgatggacggtgtcaaccaagtatcttatctggcagtactggacgctagaa caatgacattggtcaataaatctaaacttccaacgaacgttccatttacatttcatggtcgactttttgatancctgatt ttcagtaaatattttgcattacttaatgacacattttgcaccaaatcatccatccatccgtttcttcgttcgttcgttcg tccgtttgtttgtttgtttgtttgtttgtttgtttgtttgttcgttcgttcataa |
|
Protein
| Protein ID | pfu_aug1.0_15105.1_68820.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15105.1_68820.t1 MENYPLKFEKPLPKWLKGTLLRNGPGRFGVGERNFTNLLDGFAKGVSWNFPGDGSSYFSTKFLLSSCYNDSIKADDIATY LTIAPVNPPFTLEQKFKALWRNMDNLNVNVFNFTSDLVVLNDVWTLYTIDRRRLELLERVDAQLPGTYLGFPYMSHISTA HPLPEAGTGNHITFIASIALLPGFRHKLTLVRVQSTKRREIIAQWHIKQISYMHSFSVSQNYALLIASPYYIDFNRMLRN MNIGKAMKWENDEPSTIFVVHLKTGRVQSFDSETMFTMHHVNAFEIDTFRLAMDVIAYKKANSFSSISLSVLRNSTLRDA AALPSKLKRYIVNLKTGKVSVKVFRNSSIQPETAQIELPTINEKYRSKRYCFAYTVLYKADNKSYSNMAIMKKDLCHKGG ASKDQSWSLRHHYVNEAWFVPREGGVAEDDGLLLFPMMDGVNQVSYLAVLDARTMTLVNKSKLPTNVPFTFHGRLFDXLI FSKYFALLNDTFCTKSSIHPFLRSFVRPFVCLFVCLFVCLFVRS |
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