Gene
Gene Model ID | pfu_aug1.0_15123.1_61451 |
---|---|
Locus | scaffold15123.1 : 5442 ... 15872 : + |
To GenomeBrowser | scaffold15123.1:5442..15872 |
Genes list of scaffold | scaffold15123.1 |
Synonym | pfu_aug2.0_2830.1_02267 |
Manual annotation
Study field | Transcription Factors |
---|---|
Gene name | Pfu-Mnt |
Description | Best hit to NP_064706 max-binding protein MNT [Homo sapiens] with 2e-29 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_15123.1_61451.t1 | 2 | 1 | HLH | 67 | 112 | 5.1e-06 | 26.0 | 1.8e-09 | 1.4e-05 | 24.7 |
pfu_aug1.0_15123.1_61451.t1 | 2 | 2 | HLH | 399 | 421 | 5.1e-06 | 26.0 | 0.31 | 2300.0 | -1.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_15123.1_61451.t1 | gi|241594851|ref|XP_002404397.1| | max binding protein mnt, putative [Ixodes scapularis] | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_15123.1_61451.t1 |
---|---|
Definition | - |
>pfu_aug1.0_15123.1_61451.t1 atgagcctaaatacactgctcgaagcagcggaatttttggaatggcgtaaccagtctaaaacacgtgccgatgacgctac gcaagattctcaaggatcatctaaaaatgccacaactggagggtcggatacatcaccagagtccagcaactctggtcaga atatgtttatgagtttcatggagttggaagatttaaaagagaagcgacgatcgggagggagagcacatctaaaggagtgt tttgacttcctaaagaagcagattcctaccttagaagataaacgtagctctaacctgggtatactccgagggtctatcag atacatacaggcccttaaaaggaaggaaagagagtatgagcaggagatgcagagattggctcgggagaaaatctccctac gagagagaatgtcctcgttaaagatggagcttgccgccatgaatattgaggtagatctgaatcagtggagaacactccca gacgactgtgaaagtaactccacatccactgctactggtaaagaaatccattcaggcccggtgattacacatgtagctgg tatggcatacaaagatcaatctatcaaacacaacaacatgaagttattgaaggtcctgacacctttccaagctaaaggag cacccacagtagctaaacacccgccagcacagaggccacccctgaccatggggctgtcatcgggtgtggtcaccagtact gctcctaaggtggggtcagaggggaaacctcccatcaccaagctcctggctcagacactggaacgtagacagcttaaaaa tcaacaggagaaacaccagcaggaattactgaggggaaatctctgtcccaagcctaccactacagctgtcagtgtacctt taaatattcctggtccagccaccatccaagccctgcgagcaggacagccacccagacaacaacttgccttccccatccca ggggtaggggctcagatactagctacgtccccagcgcagcagctggcagctcttaacaggctagctgtacaggcctctgt aaccatgcctgtgtctgggctcactgccatccccatgacttcactggcaaaaggcctgacgcagccattccttgttacta tgggaggtatagctgccgtacctcagagtgccaccaccactgtctccaccaccaccaccacgattgtaactctgtctacg tcagcatccactgtatccacgtcagccaccacggcatccaagccctctgttctacagacagcactaaacacatccgcggt gccactccataccatacctatgacagctatagctgccgtccccacactgcggccaatcattggtcctgcgggggccaccg cacaaatgtttggacatataccttttaatttactggcggcatcaactatgactagaacatcagtgtcgtcaatgttggcc caggtaaccacggtaacaaacagcacatcaacgacggcccaaacagttaccacttctcttcagtctccggctgtacaaca gctgatggcagcacaaggaggacaactcttgtcacctatgacggtgatgtcacctacgataaatctagccccaaatttaa ctcagacacaactgagctctatgctatctcagcccctccttaagcctattcccttccccatgttccaccaggggttgatc caggggtctcaggtgggtggggtgttaagtcagccggtggttaaacctctagtcgttgtttctatacctaacaatgttgt cactacgtccagtgttagtctaacaagtgccagttctaatgtgacctcaacaacagcttcttga |
Protein
Protein ID | pfu_aug1.0_15123.1_61451.t1 |
---|---|
Definition | - |
>pfu_aug1.0_15123.1_61451.t1 MSLNTLLEAAEFLEWRNQSKTRADDATQDSQGSSKNATTGGSDTSPESSNSGQNMFMSFMELEDLKEKRRSGGRAHLKEC FDFLKKQIPTLEDKRSSNLGILRGSIRYIQALKRKEREYEQEMQRLAREKISLRERMSSLKMELAAMNIEVDLNQWRTLP DDCESNSTSTATGKEIHSGPVITHVAGMAYKDQSIKHNNMKLLKVLTPFQAKGAPTVAKHPPAQRPPLTMGLSSGVVTST APKVGSEGKPPITKLLAQTLERRQLKNQQEKHQQELLRGNLCPKPTTTAVSVPLNIPGPATIQALRAGQPPRQQLAFPIP GVGAQILATSPAQQLAALNRLAVQASVTMPVSGLTAIPMTSLAKGLTQPFLVTMGGIAAVPQSATTTVSTTTTTIVTLST SASTVSTSATTASKPSVLQTALNTSAVPLHTIPMTAIAAVPTLRPIIGPAGATAQMFGHIPFNLLAASTMTRTSVSSMLA QVTTVTNSTSTTAQTVTTSLQSPAVQQLMAAQGGQLLSPMTVMSPTINLAPNLTQTQLSSMLSQPLLKPIPFPMFHQGLI QGSQVGGVLSQPVVKPLVVVSIPNNVVTTSSVSLTSASSNVTSTTAS |