Gene
| Gene Model ID | pfu_aug1.0_15123.1_61451 |
|---|---|
| Locus | scaffold15123.1 : 5442 ... 15872 : + |
| To GenomeBrowser | scaffold15123.1:5442..15872 |
| Genes list of scaffold | scaffold15123.1 |
| Synonym | pfu_aug2.0_2830.1_02267 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Mnt |
| Description | Best hit to NP_064706 max-binding protein MNT [Homo sapiens] with 2e-29 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15123.1_61451.t1 | 2 | 1 | HLH | 67 | 112 | 5.1e-06 | 26.0 | 1.8e-09 | 1.4e-05 | 24.7 |
| pfu_aug1.0_15123.1_61451.t1 | 2 | 2 | HLH | 399 | 421 | 5.1e-06 | 26.0 | 0.31 | 2300.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15123.1_61451.t1 | gi|241594851|ref|XP_002404397.1| | max binding protein mnt, putative [Ixodes scapularis] | 2.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_15123.1_61451.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15123.1_61451.t1 atgagcctaaatacactgctcgaagcagcggaatttttggaatggcgtaaccagtctaaaacacgtgccgatgacgctac gcaagattctcaaggatcatctaaaaatgccacaactggagggtcggatacatcaccagagtccagcaactctggtcaga atatgtttatgagtttcatggagttggaagatttaaaagagaagcgacgatcgggagggagagcacatctaaaggagtgt tttgacttcctaaagaagcagattcctaccttagaagataaacgtagctctaacctgggtatactccgagggtctatcag atacatacaggcccttaaaaggaaggaaagagagtatgagcaggagatgcagagattggctcgggagaaaatctccctac gagagagaatgtcctcgttaaagatggagcttgccgccatgaatattgaggtagatctgaatcagtggagaacactccca gacgactgtgaaagtaactccacatccactgctactggtaaagaaatccattcaggcccggtgattacacatgtagctgg tatggcatacaaagatcaatctatcaaacacaacaacatgaagttattgaaggtcctgacacctttccaagctaaaggag cacccacagtagctaaacacccgccagcacagaggccacccctgaccatggggctgtcatcgggtgtggtcaccagtact gctcctaaggtggggtcagaggggaaacctcccatcaccaagctcctggctcagacactggaacgtagacagcttaaaaa tcaacaggagaaacaccagcaggaattactgaggggaaatctctgtcccaagcctaccactacagctgtcagtgtacctt taaatattcctggtccagccaccatccaagccctgcgagcaggacagccacccagacaacaacttgccttccccatccca ggggtaggggctcagatactagctacgtccccagcgcagcagctggcagctcttaacaggctagctgtacaggcctctgt aaccatgcctgtgtctgggctcactgccatccccatgacttcactggcaaaaggcctgacgcagccattccttgttacta tgggaggtatagctgccgtacctcagagtgccaccaccactgtctccaccaccaccaccacgattgtaactctgtctacg tcagcatccactgtatccacgtcagccaccacggcatccaagccctctgttctacagacagcactaaacacatccgcggt gccactccataccatacctatgacagctatagctgccgtccccacactgcggccaatcattggtcctgcgggggccaccg cacaaatgtttggacatataccttttaatttactggcggcatcaactatgactagaacatcagtgtcgtcaatgttggcc caggtaaccacggtaacaaacagcacatcaacgacggcccaaacagttaccacttctcttcagtctccggctgtacaaca gctgatggcagcacaaggaggacaactcttgtcacctatgacggtgatgtcacctacgataaatctagccccaaatttaa ctcagacacaactgagctctatgctatctcagcccctccttaagcctattcccttccccatgttccaccaggggttgatc caggggtctcaggtgggtggggtgttaagtcagccggtggttaaacctctagtcgttgtttctatacctaacaatgttgt cactacgtccagtgttagtctaacaagtgccagttctaatgtgacctcaacaacagcttcttga |
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Protein
| Protein ID | pfu_aug1.0_15123.1_61451.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15123.1_61451.t1 MSLNTLLEAAEFLEWRNQSKTRADDATQDSQGSSKNATTGGSDTSPESSNSGQNMFMSFMELEDLKEKRRSGGRAHLKEC FDFLKKQIPTLEDKRSSNLGILRGSIRYIQALKRKEREYEQEMQRLAREKISLRERMSSLKMELAAMNIEVDLNQWRTLP DDCESNSTSTATGKEIHSGPVITHVAGMAYKDQSIKHNNMKLLKVLTPFQAKGAPTVAKHPPAQRPPLTMGLSSGVVTST APKVGSEGKPPITKLLAQTLERRQLKNQQEKHQQELLRGNLCPKPTTTAVSVPLNIPGPATIQALRAGQPPRQQLAFPIP GVGAQILATSPAQQLAALNRLAVQASVTMPVSGLTAIPMTSLAKGLTQPFLVTMGGIAAVPQSATTTVSTTTTTIVTLST SASTVSTSATTASKPSVLQTALNTSAVPLHTIPMTAIAAVPTLRPIIGPAGATAQMFGHIPFNLLAASTMTRTSVSSMLA QVTTVTNSTSTTAQTVTTSLQSPAVQQLMAAQGGQLLSPMTVMSPTINLAPNLTQTQLSSMLSQPLLKPIPFPMFHQGLI QGSQVGGVLSQPVVKPLVVVSIPNNVVTTSSVSLTSASSNVTSTTAS |
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