Gene
| Gene Model ID | pfu_aug1.0_15151.1_68828 |
|---|---|
| Locus | scaffold15151.1 : 8417 ... 16785 : - |
| To GenomeBrowser | scaffold15151.1:8417..16785 |
| Genes list of scaffold | scaffold15151.1 |
| Synonym | pfu_aug2.0_193.1_10418 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15151.1_68828.t1 | 2 | 1 | Steroid_dh | 21 | 63 | 2.1e-21 | 76.2 | 0.58 | 1400.0 | -1.1 |
| pfu_aug1.0_15151.1_68828.t1 | 2 | 2 | Steroid_dh | 133 | 222 | 2.1e-21 | 76.2 | 2.4e-24 | 5.9e-21 | 74.8 |
| pfu_aug1.0_15151.1_68828.t1 | 1 | 1 | DUF1295 | 161 | 221 | 5.1e-07 | 29.2 | 3.5e-10 | 8.5e-07 | 28.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15151.1_68828.t1 | gi|260784113|ref|XP_002587113.1| | hypothetical protein BRAFLDRAFT_129984 [Branchiostoma floridae] | 3.9937e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_15151.1_68828.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15151.1_68828.t1 atgacttttcagggtataccatacagtttttatttggaagacgatgacactgtacgtttctgggtccactatggactggt gatactgggttttctgctggcgatcattactgtactggtacagtggctaagtccagctccctatggtaaacatgaaaaac aggacgctaactggggtgtggccattccacagagaatggggcatatcctgtcagacgctatccctggcgttcttctcttt ttgctggtgtttttcttctatggttctaagagagagtatgcgaactatctatttcttggtcttttccagttgcattattt acatagggggattgtacatcctttgacgatgagatacagaagtgcaaaggttgcattagggataacacttggtggatttt tcccaaactgcctttttcacttcatcaatgcagattttgctggatcggcagatttcaacagcaactatttttatgatcca aggtttatcacaggaatcatcttgtatatcgtcggtttcgtcacaaatcgttgggcagactggaagttacgatctctgag aaatacaaaaggttgcacgggttactacattccatatggaggactgtttgaacttatctcgtgtccaaattacttcggag aattagtgcaatggacaggatgggctcaaaacctaccagcacgaggacgcaaaatagaaaatatcaaagaaatgacctta tacggaatgtcggaaacaattggctatgcagatggtcaaagtaagtggtcaaagatatcaagcctgaaagtcaccagtgt atag |
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Protein
| Protein ID | pfu_aug1.0_15151.1_68828.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15151.1_68828.t1 MTFQGIPYSFYLEDDDTVRFWVHYGLVILGFLLAIITVLVQWLSPAPYGKHEKQDANWGVAIPQRMGHILSDAIPGVLLF LLVFFFYGSKREYANYLFLGLFQLHYLHRGIVHPLTMRYRSAKVALGITLGGFFPNCLFHFINADFAGSADFNSNYFYDP RFITGIILYIVGFVTNRWADWKLRSLRNTKGCTGYYIPYGGLFELISCPNYFGELVQWTGWAQNLPARGRKIENIKEMTL YGMSETIGYADGQSKWSKISSLKVTSV |
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