Gene
| Gene Model ID | pfu_aug1.0_1525.1_37041 |
|---|---|
| Locus | scaffold1525.1 : 38076 ... 48346 : + |
| To GenomeBrowser | scaffold1525.1:38076..48346 |
| Genes list of scaffold | scaffold1525.1 |
| Synonym | pfu_aug2.0_1623.1_11775 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | RPE65 superfamily |
| Description | Highest blast hit to YP_001424409.1 lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii Dugway 5J108-111] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1525.1_37041.t1 | 1 | 1 | RPE65 | 3 | 437 | 0.0 | 247.9 | 0.0 | 0.0 | 247.6 |
Transcript
| Transcript ID | pfu_aug1.0_1525.1_37041.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1525.1_37041.t1 atgggtaacctcttcgacggtttcgcaaaattagccaagtggacatttccaggaaacggttcagcatacttttcaacaaa atttttacgttcatctttttttaacgattcaatgacaatcaatgatatagctccatacatgaccaccagtccggtgaatc ctccatttacagtagaacaaaccttgcagtcccttcaaaatggcatggacaatccaaacgtaaatatctacaattttact tcagacagcgtcgctttaaatgacatgtggattctatacacatttgatccaaaatctttaactctacaacaaaaggttaa tgcagagataccagatgcaaagttaggattcccctttataagtcccatatccagcgcccatcccctgcctgagcctaaca ccaacaaccatttaacttttgtagggagcctcgctttgataccgaggctgaagcataagctttcactaataagggttaaa tcttctaataaaagagagatgatagcacaatggagcgtagacaatatgtcatacatgcattctttctcggtaacagaaaa gtacgctttattcctagccagtccctattattatgaagttaaagaaatgtttacacattcagatgtggcgatgtcaatga aatggtttcctgaccaaccttctctcatctatgttgttgaactatatacagggagagtccgtactttcaaaacagaagct atgttctccatgcatcatataaacgcctttgacattgaccaggatcatattgccatggatgtggtagcattcaaagaggc aggtttcttcagctcagtgtctctcaacgttctccgaaaccaaactctcagaaatgctgtaaatttgaattcgcaagtaa aacgatatgttttgaatttcaaagataataccgtcgatataataactttccctgattctcaaaaaattccctttgcatcg cgattattaatccctaccataaacgaaaactacagatccaaaaagtattgctttgcttacggacttgtcatgaaaatgga tggagtaaactatgctaatatgtcagtagctaagaaagacctatgcgggaactccacagataaggcatggtctttgaaga atcattacctgacagaggcgtggtttgtcccaaaccccatgggcacagaggaagatgatggatacttaatgtttccggct cttgacggcgtaaatagaacatctttccttgccatacttgacgctaaaactatgaatctagttaataaagcggaacttcc aacaactgtgccattccactttcatggtagattatttgacgtctag |
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Protein
| Protein ID | pfu_aug1.0_1525.1_37041.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1525.1_37041.t1 MGNLFDGFAKLAKWTFPGNGSAYFSTKFLRSSFFNDSMTINDIAPYMTTSPVNPPFTVEQTLQSLQNGMDNPNVNIYNFT SDSVALNDMWILYTFDPKSLTLQQKVNAEIPDAKLGFPFISPISSAHPLPEPNTNNHLTFVGSLALIPRLKHKLSLIRVK SSNKREMIAQWSVDNMSYMHSFSVTEKYALFLASPYYYEVKEMFTHSDVAMSMKWFPDQPSLIYVVELYTGRVRTFKTEA MFSMHHINAFDIDQDHIAMDVVAFKEAGFFSSVSLNVLRNQTLRNAVNLNSQVKRYVLNFKDNTVDIITFPDSQKIPFAS RLLIPTINENYRSKKYCFAYGLVMKMDGVNYANMSVAKKDLCGNSTDKAWSLKNHYLTEAWFVPNPMGTEEDDGYLMFPA LDGVNRTSFLAILDAKTMNLVNKAELPTTVPFHFHGRLFDV |
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