Gene
| Gene Model ID | pfu_aug1.0_1526.1_07992 |
|---|---|
| Locus | scaffold1526.1 : 10876 ... 17638 : + |
| To GenomeBrowser | scaffold1526.1:10876..17638 |
| Genes list of scaffold | scaffold1526.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1526.1_07992.t1 | 2 | 1 | CABIT | 33 | 97 | 1.8e-22 | 79.5 | 0.0015 | 22.0 | 3.9 |
| pfu_aug1.0_1526.1_07992.t1 | 2 | 2 | CABIT | 45 | 322 | 1.8e-22 | 79.5 | 3.7e-26 | 5.6e-22 | 78.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1526.1_07992.t1 | gi|338727911|ref|XP_001496762.3| | PREDICTED: GRB2-associated and regulator of MAPK protein isoform X1 [Equus caballus] | 4.0e-18 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1526.1_07992.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1526.1_07992.t1 atggcggtcacgctcaatggaatgatgccgtctgttccgaaacccaacccaaaatctcctcctcgtcctgtgaaggactt tgtatgggatgaaaaaccgaagtttttgaaagacttgttgactttacatcgtttacctttcactgccaaagttcataaag gtgatctgtctagattctctccagcatggaaagcctccgcaggagatagtgcggaaaatatcctgcaagtcttggagata cggaggagaaaacttgtcgtctgcaagaagatgcaatgggaccggaagacgggaacatacagcaccatcgataaacaaca agacattcctgttacatacaaaggttggtttgaggtattaccggaggagggccatcccgtggagtactttgactctatac aggccatcacaaacatcaaacccagacgcttcctgctgcgtacatctatagtcggctatcagctcagcattgacaatggt gttagctgctggatgccgttagagttacgccccggacttgttctgaccaccggcattgtctatatggaccacaaaaagac aaagtccaacgtcaaaggcttcctaaaacggattcttaaacccgggaaacaaacaaaaaaggatcaggatttgaaatatt tacaatgttttgacagtgatgggaaagaaataatgatacctttgattatgacgggtgttttcagtccggttggtgagcct tctgaaagtaactatgacgcagtgtatgaaatgcaggatcttattcttgccttcaatcttccggtcaaagcacagcttat tcacgaagaggaggaagatcagacgcgcaaaataatccctcacgggttaatacaaatcgaggaagttatcgacgaggaaa cggtaatagctgggcgttacccaatttgtggagaagaggataaaactttcgaaattcctgctaatgctgatgtgcttcta aggaaagatttgtctcgaaagaaatgccaaagcaagagtactccctcggagcaatttcagagtgatcctccgcaagagca aatctacgcaaatagtgtcgtgcaggacgtcgaactcccgacacggaaagaaagcaagaaacaaaagggacaaggtattc ttgaaaaactaagtgtacgatccaaagcaagaaaagagagggcaagtctcaaacaactgcaagaggagggagtattttcg tctagacttagtaaaagtgaattgaatttagaggattactttaaagcagatgataaaaacgaaaataagaaaaatacaat agaacctacaaatactgaatctgatgagactttatgtgaccccgtagcaaataatgttgatgaaaacgtgcctgtgtatt cgtttggagtagaaacgagtgggaaaccaatgcaaaaccgagatctgcctcctatacctaaagcaaaggaactttctcat gaaaaggatactctgtatgaggagctacctattgccccaaaacctccccaaagtccttacttgtacaggtcacattctca tgacgacgatgatgatgggtacatgtgccctgctcaactgcgcaggcctgattccaggagatcgtcatccggtagtaacc tgagaagtaagccccctatcgcccctcgtgactatacatactcaaaaccacgtaaacgaggggaaattcaatctagctct gttgattatggttacaacgaaacaagtccgatcgatatagatactttatttaacttttcttcagaagctgaggggtacga gccatcaaatgtgacgtcaccttacgctaccggacaactctatcaggcaactgcaatagctcagacaaaacgtgaaggca tgaatccttatgaggaaaggcgcctctcggcagacgacaccgctttatctcgtggcaatattctagcgtggaacaaaatc aaatcgaggtcacaaaagagtttgaacgtggacgcgaatgtaacggttaggagtcacaatgtacggaaggtccgcaatgc agcagatgttttcaatgtaggtgaaaatttggcgcgaaattcaggacagagtagagtttctgttgtcagtcccatcgcaa atccatacagcagtgttgccgattccaatcaaaatcaacgtttgtcattctatgagcaggaaaatttcgatagacgatct ttatacgcagcaagcgaacccggaattcgtcgttatcagcgaacattgtcgtctgcgggtctgagtgatatctatggtaa cggtcgtaatggtgatgattcggccttctcgggtgattacgggtaccatggcgatagtgaatacagttatagtgaatatt ctgaatttcgcgatgacggctggcgaccgcctagtgatatatcaaaccttagcgtacaggaggtgtccaaatcattacgg tacataggaatgaaagatagggtggtgctacgtctagcgaacgaacagatagacggacagctactatgctctttagataa gcagcttttacaagagggctttccagaactgaatgctttagaaataaagaaaatcatggattttataaatggttggcgac caaagaaatga |
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Protein
| Protein ID | pfu_aug1.0_1526.1_07992.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1526.1_07992.t1 MAVTLNGMMPSVPKPNPKSPPRPVKDFVWDEKPKFLKDLLTLHRLPFTAKVHKGDLSRFSPAWKASAGDSAENILQVLEI RRRKLVVCKKMQWDRKTGTYSTIDKQQDIPVTYKGWFEVLPEEGHPVEYFDSIQAITNIKPRRFLLRTSIVGYQLSIDNG VSCWMPLELRPGLVLTTGIVYMDHKKTKSNVKGFLKRILKPGKQTKKDQDLKYLQCFDSDGKEIMIPLIMTGVFSPVGEP SESNYDAVYEMQDLILAFNLPVKAQLIHEEEEDQTRKIIPHGLIQIEEVIDEETVIAGRYPICGEEDKTFEIPANADVLL RKDLSRKKCQSKSTPSEQFQSDPPQEQIYANSVVQDVELPTRKESKKQKGQGILEKLSVRSKARKERASLKQLQEEGVFS SRLSKSELNLEDYFKADDKNENKKNTIEPTNTESDETLCDPVANNVDENVPVYSFGVETSGKPMQNRDLPPIPKAKELSH EKDTLYEELPIAPKPPQSPYLYRSHSHDDDDDGYMCPAQLRRPDSRRSSSGSNLRSKPPIAPRDYTYSKPRKRGEIQSSS VDYGYNETSPIDIDTLFNFSSEAEGYEPSNVTSPYATGQLYQATAIAQTKREGMNPYEERRLSADDTALSRGNILAWNKI KSRSQKSLNVDANVTVRSHNVRKVRNAADVFNVGENLARNSGQSRVSVVSPIANPYSSVADSNQNQRLSFYEQENFDRRS LYAASEPGIRRYQRTLSSAGLSDIYGNGRNGDDSAFSGDYGYHGDSEYSYSEYSEFRDDGWRPPSDISNLSVQEVSKSLR YIGMKDRVVLRLANEQIDGQLLCSLDKQLLQEGFPELNALEIKKIMDFINGWRPKK |
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