Gene
| Gene Model ID | pfu_aug1.0_1528.1_51325 |
|---|---|
| Locus | scaffold1528.1 : 18403 ... 38615 : - |
| To GenomeBrowser | scaffold1528.1:18403..38615 |
| Genes list of scaffold | scaffold1528.1 |
| Synonym | pfu_aug2.0_216.1_20433 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | RPE65 superfamily |
| Description | Highest blast hit to YP_003115563.1beta-carotene 15,15'-monooxygenase [Catenulispora acidiphila DSM 44928] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1528.1_51325.t1 | 1 | 1 | RPE65 | 24 | 369 | 0.0 | 217.3 | 0.0 | 0.0 | 217.0 |
Transcript
| Transcript ID | pfu_aug1.0_1528.1_51325.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1528.1_51325.t1 atgctctgctcgcggtttcatcatctgcgttcttactacggaccagaatttttcggcgactactgggatttctacaaggt tgactgtaaaaccattgctactgtgacatcaataaaaccatcaacaaaagatgctaatattggattaggttacaccagtg ctatgtcaactgctcatccggtgccagaagtgggtacatcgaatcacttcacttttctgactagtatgagcatagttcca ggagtcaagcacaaaatatcaattttccggatttcatcggtggaaaaaagagatcttgtcggtcaatttcttgttgacaa agcgccttatatgcattctttctctgccaccaaaaattatattattctgttcgcccatccgtatcacgttgacatgctga agatgatgaagtcaggcatacctaaggacagtataacgtgggagcctgatttgcctggaattatctacgttatggaaata aaaacggggaaagtctatagatttgaaaccgaaacccttttttccatgcatcatataaatgcatatgagaagaacaacag caaatctttaatttatttggaccttgctgcatacccagatgtgagtatgataaacaattttgaaatttcgatacttctca ataaaaccgttcgagacagtatcaattggcagccccaaatagtacgatttgccatcgatttggcacaatcggaagtaaaa gtatcaagattcaattcaatagcatcccacttggaaatccccacaataaacgaagaatacaggtcccgccactattgtta tgtatacgggttagtttataaaagtgacaacaaaacatttgcagattttgcattcgcaaagaaagacttatgtgattcta gcggtgataaatcatggtcaatacctggacattaccccatggaaggatggttcgtaccagacccttctggaagagctgaa gatgacggcatagtaatggtaccagttgtgaatggtatagacagaaagagttatcttgctttcttggatgcgcgaaatct tactttgatcaataagtcaagcacaccatttattgttccgtttcattttcatggtcgatttttttccaacttgacgaact ga |
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Protein
| Protein ID | pfu_aug1.0_1528.1_51325.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1528.1_51325.t1 MLCSRFHHLRSYYGPEFFGDYWDFYKVDCKTIATVTSIKPSTKDANIGLGYTSAMSTAHPVPEVGTSNHFTFLTSMSIVP GVKHKISIFRISSVEKRDLVGQFLVDKAPYMHSFSATKNYIILFAHPYHVDMLKMMKSGIPKDSITWEPDLPGIIYVMEI KTGKVYRFETETLFSMHHINAYEKNNSKSLIYLDLAAYPDVSMINNFEISILLNKTVRDSINWQPQIVRFAIDLAQSEVK VSRFNSIASHLEIPTINEEYRSRHYCYVYGLVYKSDNKTFADFAFAKKDLCDSSGDKSWSIPGHYPMEGWFVPDPSGRAE DDGIVMVPVVNGIDRKSYLAFLDARNLTLINKSSTPFIVPFHFHGRFFSNLTN |
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