Gene
| Gene Model ID | pfu_aug1.0_1531.1_08004 |
|---|---|
| Locus | scaffold1531.1 : 42667 ... 58019 : - |
| To GenomeBrowser | scaffold1531.1:42667..58019 |
| Genes list of scaffold | scaffold1531.1 |
| Synonym | pfu_aug2.0_91.1_03594 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | short chain dehydrogenase/reductase family 42E, member 1 |
| Description | This is 3-beta hydroxysteroid dehydrogenase/isomerase family protein. Orthology is supported by NJ tree. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1531.1_08004.t1 | 1 | 1 | 3Beta_HSD | 2 | 139 | 1.7e-33 | 115.5 | 6.7e-37 | 2.5e-33 | 115.0 |
| pfu_aug1.0_1531.1_08004.t1 | 1 | 1 | Epimerase | 5 | 104 | 1.0e-11 | 44.7 | 4.3e-15 | 1.6e-11 | 44.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1531.1_08004.t1 | gi|83415130|ref|NP_001032779.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1531.1_08004.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1531.1_08004.t1 atggacggagaagagtcccttccatatctacctcttgacaagcatccagaccactattctcgtaccaagagcatagcgga acagctagtaatggaagctaacggcagggaggggcttcatacgtgtgccttacgtctggctggtgtctatggtccggggg aacaaagacatatacctagaaccatgagcatggtagaggcaggtttcctgttgatgctatatggtgaaggttccctacag gactttctacatgtggacaatctggtacagggccatatcctggctatgcaggctttatcaccagccaatcatagtgtagc agctggccagacatactttctatcagatggtgctcccattaatactttccttttcttcaaaccactttttgaaggattgg gatacaaattaccaaaactacaaatatctctaagtgttgtgtattttatagcatatttaacagagtggatccactacata gtagggcggatctataacttccagccaatgttgaccaggactgaggtatacaagaccggtgtcacacactacttcagtat acgtaaagctcagcgagatttgggttacgaacccacggtacagaatgatttgactttagtgcttaaggaatatatagcag caggacatggcaggaagagaaagaagggctcctcttttgtgtattatcttgtaaatgttataataggacttatatttgca tcatttatactttcatatttacctggagtaaaataa |
|
Protein
| Protein ID | pfu_aug1.0_1531.1_08004.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1531.1_08004.t1 MDGEESLPYLPLDKHPDHYSRTKSIAEQLVMEANGREGLHTCALRLAGVYGPGEQRHIPRTMSMVEAGFLLMLYGEGSLQ DFLHVDNLVQGHILAMQALSPANHSVAAGQTYFLSDGAPINTFLFFKPLFEGLGYKLPKLQISLSVVYFIAYLTEWIHYI VGRIYNFQPMLTRTEVYKTGVTHYFSIRKAQRDLGYEPTVQNDLTLVLKEYIAAGHGRKRKKGSSFVYYLVNVIIGLIFA SFILSYLPGVK |
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