Gene
| Gene Model ID | pfu_aug1.0_15323.1_39685 |
|---|---|
| Locus | scaffold15323.1 : 6926 ... 11769 : + |
| To GenomeBrowser | scaffold15323.1:6926..11769 |
| Genes list of scaffold | scaffold15323.1 |
| Synonym | pfu_aug2.0_943.1_11322 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | MyoD |
| Description | BLASTP best hitted 'Pediculus humanus corporis myogenic factor, putative'. |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | MYOD-like DNA-binding protein |
| Description | BLASTP best hit to NCBI Accession AAC47320.1 |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | myoD |
| Description | BLASTP best hit to NCBI Accession GAA47738.1 |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | Myf6-like DNA-binding protein |
| Description | BLASTP best hit to NCBI Accession XP_002429203.1 |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | myod |
| Description | reciprocal BLASTP best hit to NCBI Acession GU461318 |
| mRNA evidence |
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-MyoD |
| Description | Best hit to NP_005584 myogenic factor 5 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. pfu0_2_09348_05470 was used for analyses. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15323.1_39685.t1 | 2 | 1 | Basic | 90 | 103 | 1.8e-13 | 51.0 | 0.26 | 1900.0 | -0.4 |
| pfu_aug1.0_15323.1_39685.t1 | 2 | 2 | Basic | 134 | 210 | 1.8e-13 | 51.0 | 2.4e-17 | 1.8e-13 | 51.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15323.1_39685.t1 | gi|242017454|ref|XP_002429203.1| | myogenic factor, putative [Pediculus humanus corporis] | 6.0e-31 |
Transcript
| Transcript ID | pfu_aug1.0_15323.1_39685.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15323.1_39685.t1 atgatgatgatggcggattatcggagctgtagatacgaaccgaatttccacggctacgaagctggtcattcgctcgttgg aggtacgggagggacgggagggaccgtggaaatgtctgatggacgccacattactgacttatcttatccccattccacgg ggagtcacgactattataatcagtctaacgtaacatttcaacgccatttcgagcgtccgtcatacagcgctgatatgtac gttccttatcaaacggcgggtcactctcagaagaattattattctgattcacagccgccgcattctgaccattcaaaaat gagatttactcaccttggtaaagaacaacagccaaattactccgaatctaaggaagttaaagtggaaagttcgattgaaa gtgaacgggatgttgtgaaaggtgagacttttgagaaatgcgatggaaaaggaagtccgcattgcagctcacctacgaaa gaagaaaatgaagatttggagacaattgcatcttctgaagatggagatgaacatataccacacgtgctggcgccaggatt tcacggtcccaacagacgctgcctattatgggcatgtaaggcatgcaaaaggaagactgtgacaattgaccgtaggaaag cagcaacgttgagagaaaggagacgactcaggaaagtcaacgaagcttttgagacattaaaaagaagaacatgtccaaat cctaaccaaagacnactgaccttatcaaattttcagaattttttaaaattttggcaattttttttagatatttga |
|
Protein
| Protein ID | pfu_aug1.0_15323.1_39685.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15323.1_39685.t1 MMMMADYRSCRYEPNFHGYEAGHSLVGGTGGTGGTVEMSDGRHITDLSYPHSTGSHDYYNQSNVTFQRHFERPSYSADMY VPYQTAGHSQKNYYSDSQPPHSDHSKMRFTHLGKEQQPNYSESKEVKVESSIESERDVVKGETFEKCDGKGSPHCSSPTK EENEDLETIASSEDGDEHIPHVLAPGFHGPNRRCLLWACKACKRKTVTIDRRKAATLRERRRLRKVNEAFETLKRRTCPN PNQRXLTLSNFQNFLKFWQFFLDI |
|