Gene
| Gene Model ID | pfu_aug1.0_15348.1_25413 |
|---|---|
| Locus | scaffold15348.1 : 38568 ... 41813 : - |
| To GenomeBrowser | scaffold15348.1:38568..41813 |
| Genes list of scaffold | scaffold15348.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15348.1_25413.t1 | 5 | 1 | LRR_8 | 5 | 40 | 8.3e-34 | 115.1 | 2.7e-05 | 0.067 | 12.9 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 1 | LRR_4 | 6 | 17 | 3.7e-22 | 77.4 | 0.0029 | 7.3 | 6.3 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 1 | LRR_1 | 6 | 34 | 3.4e-19 | 65.9 | 6.9e-05 | 0.17 | 12.0 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 1 | LRR_6 | 6 | 16 | 1.1e-12 | 46.5 | 0.0046 | 11.0 | 6.4 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 1 | LRR_7 | 6 | 18 | 1.7e-09 | 36.2 | 0.012 | 29.0 | 5.4 |
| pfu_aug1.0_15348.1_25413.t1 | 5 | 2 | LRR_8 | 29 | 91 | 8.3e-34 | 115.1 | 4.3e-14 | 1.1e-10 | 41.1 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 2 | LRR_4 | 29 | 72 | 3.7e-22 | 77.4 | 3.4e-07 | 0.00085 | 18.8 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 2 | LRR_6 | 29 | 50 | 1.1e-12 | 46.5 | 0.0013 | 3.2 | 8.0 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 2 | LRR_7 | 29 | 42 | 1.7e-09 | 36.2 | 0.19 | 460.0 | 1.8 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 2 | LRR_1 | 31 | 43 | 3.4e-19 | 65.9 | 0.035 | 88.0 | 3.7 |
| pfu_aug1.0_15348.1_25413.t1 | 2 | 1 | LRR_5 | 52 | 142 | 2.4e-08 | 33.7 | 3.6e-07 | 0.00089 | 18.9 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 3 | LRR_6 | 55 | 69 | 1.1e-12 | 46.5 | 0.0088 | 22.0 | 5.5 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 3 | LRR_1 | 56 | 77 | 3.4e-19 | 65.9 | 9.4e-06 | 0.023 | 14.6 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 3 | LRR_7 | 56 | 71 | 1.7e-09 | 36.2 | 0.015 | 37.0 | 5.1 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 4 | LRR_6 | 79 | 91 | 1.1e-12 | 46.5 | 0.0012 | 2.9 | 8.2 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 3 | LRR_4 | 80 | 119 | 3.7e-22 | 77.4 | 1.3e-09 | 3.3e-06 | 26.5 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 4 | LRR_1 | 81 | 96 | 3.4e-19 | 65.9 | 0.0034 | 8.5 | 6.8 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 4 | LRR_7 | 81 | 92 | 1.7e-09 | 36.2 | 0.032 | 78.0 | 4.1 |
| pfu_aug1.0_15348.1_25413.t1 | 5 | 3 | LRR_8 | 88 | 135 | 8.3e-34 | 115.1 | 1.9e-06 | 0.0048 | 16.6 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 5 | LRR_7 | 101 | 116 | 1.7e-09 | 36.2 | 0.027 | 66.0 | 4.3 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 5 | LRR_6 | 103 | 118 | 1.1e-12 | 46.5 | 0.0032 | 7.8 | 6.9 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 5 | LRR_1 | 104 | 126 | 3.4e-19 | 65.9 | 7.6e-05 | 0.19 | 11.8 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 6 | LRR_7 | 154 | 168 | 1.7e-09 | 36.2 | 0.68 | 1700.0 | 0.1 |
| pfu_aug1.0_15348.1_25413.t1 | 5 | 4 | LRR_8 | 158 | 215 | 8.3e-34 | 115.1 | 1.4e-09 | 3.5e-06 | 26.6 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 4 | LRR_4 | 158 | 198 | 3.7e-22 | 77.4 | 4.0e-05 | 0.098 | 12.3 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 6 | LRR_1 | 158 | 178 | 3.4e-19 | 65.9 | 0.098 | 240.0 | 2.4 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 6 | LRR_6 | 158 | 170 | 1.1e-12 | 46.5 | 0.22 | 540.0 | 1.2 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 7 | LRR_6 | 179 | 193 | 1.1e-12 | 46.5 | 0.38 | 940.0 | 0.4 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 5 | LRR_4 | 180 | 216 | 3.7e-22 | 77.4 | 1.4e-07 | 0.00035 | 20.1 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 7 | LRR_7 | 180 | 195 | 1.7e-09 | 36.2 | 0.19 | 470.0 | 1.8 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 7 | LRR_1 | 181 | 197 | 3.4e-19 | 65.9 | 0.03 | 74.0 | 3.9 |
| pfu_aug1.0_15348.1_25413.t1 | 2 | 2 | LRR_5 | 182 | 257 | 2.4e-08 | 33.7 | 1.5e-06 | 0.0036 | 17.0 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 8 | LRR_6 | 202 | 215 | 1.1e-12 | 46.5 | 0.0065 | 16.0 | 5.9 |
| pfu_aug1.0_15348.1_25413.t1 | 5 | 5 | LRR_8 | 203 | 264 | 8.3e-34 | 115.1 | 7.5e-17 | 1.9e-13 | 49.9 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 6 | LRR_4 | 204 | 244 | 3.7e-22 | 77.4 | 2.9e-08 | 7.3e-05 | 22.2 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 8 | LRR_1 | 204 | 226 | 3.4e-19 | 65.9 | 0.00016 | 0.39 | 10.9 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 8 | LRR_7 | 204 | 216 | 1.7e-09 | 36.2 | 0.017 | 43.0 | 4.9 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 9 | LRR_7 | 228 | 243 | 1.7e-09 | 36.2 | 0.0028 | 6.8 | 7.3 |
| pfu_aug1.0_15348.1_25413.t1 | 7 | 7 | LRR_4 | 229 | 264 | 3.7e-22 | 77.4 | 3.4e-06 | 0.0085 | 15.6 |
| pfu_aug1.0_15348.1_25413.t1 | 9 | 9 | LRR_1 | 229 | 248 | 3.4e-19 | 65.9 | 0.00027 | 0.66 | 10.2 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 9 | LRR_6 | 229 | 242 | 1.1e-12 | 46.5 | 0.015 | 38.0 | 4.7 |
| pfu_aug1.0_15348.1_25413.t1 | 10 | 10 | LRR_6 | 253 | 266 | 1.1e-12 | 46.5 | 0.56 | 1400.0 | -0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15348.1_25413.t1 | gi|224093925|ref|XP_002187536.1| | PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3 [Taeniopygia guttata] | 4.0e-20 |
Transcript
| Transcript ID | pfu_aug1.0_15348.1_25413.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15348.1_25413.t1 atgaacgcaagagagttggttcatctagatttatcccacaatcctttgcagacttacgaaagaaaaggcttttatgggat atctccgacactagaacatctaattctatcacatacggggctgaatgaaactcacttggcagctttatcatcttataatt ggaataaacttcgccattttgatatttcccataatgctttacgagatattccgaatggttgtttcagcaagatgcccatg ctaacttctctagatttatctttcaatgcaattgtgaaagtttcgtcttttaatttgacctatttgaggaaactcgaggc gataaacttgtctggaaaccacattactttgatagatgtaaactttttcactaagttggacggaattctaatgatgaatt tgagcgaaatgaaaagtactattaactttcaatttgcgtctccaaatcgacatacaccacatttacactggaaagaatta atattatccaattcgaagatttcagaagatacttttgagaaattcattccttacttaccaagccttgagattttaaagtt ggacaattctagagtgactcatatcgatgggatatttaaagacaattcaaaactccgacatctgtcattaagaagcaata aaattgcaattttatcaaaagacacgttcgagggattagagcattcgctggaatacctcgatattcgtgaaaatgaaata acaacagttagtaaatgcagcttcaatcggcttgagaaaatcagtgtcgtcaaactatctaaaaataattttcgatgcga ttgcaaactgaaatggttgatggaatggccgaccaaatcaaaaacgcaaacggatattgacaacatagtatgtgaatctc cgagaaaatatcgaaaccggaaattcaatatcctaaagaaagtctga |
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Protein
| Protein ID | pfu_aug1.0_15348.1_25413.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15348.1_25413.t1 MNARELVHLDLSHNPLQTYERKGFYGISPTLEHLILSHTGLNETHLAALSSYNWNKLRHFDISHNALRDIPNGCFSKMPM LTSLDLSFNAIVKVSSFNLTYLRKLEAINLSGNHITLIDVNFFTKLDGILMMNLSEMKSTINFQFASPNRHTPHLHWKEL ILSNSKISEDTFEKFIPYLPSLEILKLDNSRVTHIDGIFKDNSKLRHLSLRSNKIAILSKDTFEGLEHSLEYLDIRENEI TTVSKCSFNRLEKISVVKLSKNNFRCDCKLKWLMEWPTKSKTQTDIDNIVCESPRKYRNRKFNILKKV |
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