Gene
| Gene Model ID | pfu_aug1.0_1548.1_66022 |
|---|---|
| Locus | scaffold1548.1 : 26497 ... 42025 : - |
| To GenomeBrowser | scaffold1548.1:26497..42025 |
| Genes list of scaffold | scaffold1548.1 |
| Synonym | pfu_aug2.0_68.1_26795 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1548.1_66022.t1 | 6 | 1 | Cadherin | 26 | 104 | 0.0 | 296.2 | 2.9e-14 | 2.1e-10 | 40.6 |
| pfu_aug1.0_1548.1_66022.t1 | 6 | 2 | Cadherin | 118 | 212 | 0.0 | 296.2 | 4.7e-21 | 3.5e-17 | 62.4 |
| pfu_aug1.0_1548.1_66022.t1 | 6 | 3 | Cadherin | 229 | 317 | 0.0 | 296.2 | 8.6e-13 | 6.4e-09 | 35.9 |
| pfu_aug1.0_1548.1_66022.t1 | 6 | 4 | Cadherin | 331 | 417 | 0.0 | 296.2 | 3.0e-19 | 2.2e-15 | 56.6 |
| pfu_aug1.0_1548.1_66022.t1 | 6 | 5 | Cadherin | 437 | 527 | 0.0 | 296.2 | 4.4e-20 | 3.3e-16 | 59.3 |
| pfu_aug1.0_1548.1_66022.t1 | 6 | 6 | Cadherin | 553 | 635 | 0.0 | 296.2 | 1.1e-17 | 8.2e-14 | 51.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1548.1_66022.t1 | gi|118089479|ref|XP_420249.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_1548.1_66022.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1548.1_66022.t1 atgcagaataattcggttataacaatatcgtttcctctttctttagacaaatatgaaaggcaagagagtgacaaaacagt cgaccgcgatgttaatccgaatttcgtgattcaatcgtaccagcttcaacccgataccagtccgttctctcttgtcatcg ataattctagcggcggaagtcgagatttgaagctggtgttgcgccagaaacttgatcgtgagaaaacggaccgatatgaa ctccatgtcgttgcgcaggatggcgggagtccgaaaagatcaggagttcttgttgtcaatgttaccgtagaggatgtgaa cgataacaaacccatattcagctatccgcaatataacattactgtgctagaaaacgtcagcgtcggaaacgtccttattc aggtgtctgcacgcgatgatgacgaaggactgaacggggccgtcttttacgagttctctcctctttttactggagagagt aggaactttttctctataaatggttcatcaggggaaataaccttacaaaaacaactgacatttacttccggtcagcctca ccgcctcgttgtcaaagcctccgatagagggagccctcctcaaagtagccaagcttacgttaacattcacgtgacggata ccaacaatcactcaccggaaattaaaataaacctcatttctgatggaaaggtaaaggaaaactcaaataatggcactgtt attgcttatgtagccgtaatcgacagggatacgggcagaaatgcgctagttgtatgccagattagaaactccaaattcca actgcacacacttgccgataatgaatacaaagttgtggtttacgctaaactagatagagaatctgagatcgaacacgtgg taacgatagtctgtgaggacgacggaacaccaaagaggaacagttcagaaagcttcattgtccaggtgctcgatgtaaat gaccattctcctacatttgagaaagacatgtacacagtgtccgtatctgaaaacaaaagtccgggagagatgatcaccaa agttagcgcgtccgacaaagaccaggatcaaaacgctaagctgatatactctgttcaagaagacttcaaggacaagttca gagtggacggtgagtcgggtataataaccactcgagtggaatttgatcgtgaagttctagatcatatggagttcaaagta tacgccgccgaccaaggctcaccaatcgcttacacggcctccactatgatcaacctaactatcgaagacgaaaatgacaa catgcctactttcgattcgcagaccttgaacttttccgtttcggaaaatcatgctgatattgccgtcggaactgtcgtag caacggataaagattctggtgctaacggagatataatttacaattttccgctgccgtttcagaattctattccgttcacg atacatccggtttccggtgaaattagaacgaacaggaagttgaatagggaggataagtctaaatatagctttgttgtgat ggcaaccgacaaaggcgtctctccgcgaaattcttcagttttagttaatgtagacgttctggatgaaaacgacgagtatc cgcaaatagtgtatccccttcaaagcaatggatctataaaagtagggcatgatacatatccaaactccgtagtgaccaag gtcgaggcctttgaccttgacgatggcgaaaacggtacactgaagtatagcattcgccaaagaaacgacgacaatctatt ctacatagacggaaaaacgggaactatttatttggcacgaaaaatagaaaactacgatatcaaagattacagcattacga ttgaagtttccgataggggaacggaccccaaatctgtgacagtagaggtcaagttgaccataacctacaccccgacccca gcggcccaggagcaggccataggtcagaacgttctgatagccattactatagcttgtgtgactattgtgctatccttagc tattatagtaactattttcctcatcagacgtgttgactataacaaaaaaggccaacctttacctcctaattcggactatc aaatagccgaatctatgcaatatagtgccaaaaaatcttgtcttacaaaatctgatccccagaggacttacttatgtgaa aataacaatttttcatcaaatgacaatagaaaggaagttagtttttcattagatgacggacagagggactcgggagtgtt tatgattggacacgagcaccctagtcctcttactgttatcctcattgtacgcattcatcagctgtactacacgcgccaag gtgatttagagaagccaaaataa |
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Protein
| Protein ID | pfu_aug1.0_1548.1_66022.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1548.1_66022.t1 MQNNSVITISFPLSLDKYERQESDKTVDRDVNPNFVIQSYQLQPDTSPFSLVIDNSSGGSRDLKLVLRQKLDREKTDRYE LHVVAQDGGSPKRSGVLVVNVTVEDVNDNKPIFSYPQYNITVLENVSVGNVLIQVSARDDDEGLNGAVFYEFSPLFTGES RNFFSINGSSGEITLQKQLTFTSGQPHRLVVKASDRGSPPQSSQAYVNIHVTDTNNHSPEIKINLISDGKVKENSNNGTV IAYVAVIDRDTGRNALVVCQIRNSKFQLHTLADNEYKVVVYAKLDRESEIEHVVTIVCEDDGTPKRNSSESFIVQVLDVN DHSPTFEKDMYTVSVSENKSPGEMITKVSASDKDQDQNAKLIYSVQEDFKDKFRVDGESGIITTRVEFDREVLDHMEFKV YAADQGSPIAYTASTMINLTIEDENDNMPTFDSQTLNFSVSENHADIAVGTVVATDKDSGANGDIIYNFPLPFQNSIPFT IHPVSGEIRTNRKLNREDKSKYSFVVMATDKGVSPRNSSVLVNVDVLDENDEYPQIVYPLQSNGSIKVGHDTYPNSVVTK VEAFDLDDGENGTLKYSIRQRNDDNLFYIDGKTGTIYLARKIENYDIKDYSITIEVSDRGTDPKSVTVEVKLTITYTPTP AAQEQAIGQNVLIAITIACVTIVLSLAIIVTIFLIRRVDYNKKGQPLPPNSDYQIAESMQYSAKKSCLTKSDPQRTYLCE NNNFSSNDNRKEVSFSLDDGQRDSGVFMIGHEHPSPLTVILIVRIHQLYYTRQGDLEKPK |
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