Gene
| Gene Model ID | pfu_aug1.0_1550.1_66024 |
|---|---|
| Locus | scaffold1550.1 : 32556 ... 42190 : + |
| To GenomeBrowser | scaffold1550.1:32556..42190 |
| Genes list of scaffold | scaffold1550.1 |
| Synonym | pfu_aug2.0_77.1_23379 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1550.1_66024.t1 | 1 | 1 | adh_short | 10 | 129 | 1.2e-17 | 64.3 | 3.0e-21 | 1.5e-17 | 64.0 |
| pfu_aug1.0_1550.1_66024.t1 | 1 | 1 | adh_short_C2 | 10 | 148 | 9.1e-09 | 35.4 | 2.3e-12 | 1.2e-08 | 35.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1550.1_66024.t1 | gi|321474508|gb|EFX85473.1| | hypothetical protein DAPPUDRAFT_300311 [Daphnia pulex] | 6.99949e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1550.1_66024.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1550.1_66024.t1 atgtctatagtgagtggtaagacaacagaggagaacattttagtactgccattggacgtattaaagctggagtctcatac agctgcatttggggatgtctgtaaaaagtttggacaggtggacattctggtgaacaatgctgggagaagtcagcgagcag cgtgggagaaaactgacctacttgtggacagagatatgttagagctaaacgttatagctgtgctctcacttactaagact gtactacccagcatgctagacagacatgacggacatatcgtcaacatgagcagtgttgcaggaaagataggagctccatt gtctgggtcatacacaggtgctaagcatgctcttcagggttggtttgattgccttcgagtagaggtcgccactagaggtg tatctgttacgtctatttgccctgggcctgtcttttcaaatattctatctacagcttttacagaaaatcatggagagaag aaaagtccaacatatttccttttgattccaggagctaggaggtgccatgaagacagttga |
|
Protein
| Protein ID | pfu_aug1.0_1550.1_66024.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1550.1_66024.t1 MSIVSGKTTEENILVLPLDVLKLESHTAAFGDVCKKFGQVDILVNNAGRSQRAAWEKTDLLVDRDMLELNVIAVLSLTKT VLPSMLDRHDGHIVNMSSVAGKIGAPLSGSYTGAKHALQGWFDCLRVEVATRGVSVTSICPGPVFSNILSTAFTENHGEK KSPTYFLLIPGARRCHEDS |
|