Gene
| Gene Model ID | pfu_aug1.0_15541.1_10825 |
|---|---|
| Locus | scaffold15541.1 : 6638 ... 31985 : - |
| To GenomeBrowser | scaffold15541.1:6638..31985 |
| Genes list of scaffold | scaffold15541.1 |
| Synonym | pfu_aug2.0_1210.1_01476 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15541.1_10825.t1 | 1 | 1 | Caveolin | 543 | 650 | 5.3e-35 | 120.1 | 6.1e-39 | 9.0e-35 | 119.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15541.1_10825.t1 | gi|45387883|ref|NP_991301.1| | caveolin-3 [Danio rerio] | 3.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_15541.1_10825.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15541.1_10825.t1 atgcatggttgtccttcaagtaacgtaggagaattggatcagatacctaaacaatgtcagtttgccacagatgttagctt tgtttctcagttgataaatgtgacaaagattaaacatgtagagagatttaaaggtggcggtgagacacatcgtcctgtat caaacatggaagtagatctgaatgccagtgggaggaggacgtcactcaacgactctaactatcatatagcgtttggtacg aaagtacctggtgtgccaaaccaaagtaaaagcaaggtaagaagtcctaatacatcaagaggtgctaaatcacaacgtgg tgcaaaatttgagaacgattttcacagtagtgattccagtagtcaggaagacgaagatattagacgcaagaagcttccag ggtcacgaccccagagtggtacatccagccgaccacacagtggcagcaccagtcgtcctcatagtggtaacacatcacgt cctcacagtggatccacaagtcgaccacatagtggtacagctagtaaaccacacagtgcttcgtctagggatgccgcaag tcctaaaggacacagacaaagtgcagtgtcaaaatctcataggaaagataaacacagtgatgggcaaaactttaaccaag tgccaaagtttacgaatgtgagccctgaactcaggattagtacacaattaccaacccatcgatctgaagtgtctgtgaat ggtaatagtactaatagaagtgtgtctcgcatgaataggaaatcattaagagaaataccgcaggatgacctcagactttc tgttgtcaagtcagctgagaagccatacaacccccaggcgtatcagatggcagacattaccgagtcgtttgaggcccaga tgtttgccagcatgaagagaagtgctgaggatgcaatggaagatgtatctataaagtcccctaccagagttaacccccct cctgtagtaagccccaggaaaaccccacgcagcacacatccaggggagggaacctctgcacacagacatatctatgactt ctcccctacactcaccagtgatgatgatacaagtctcagtacatggaaagctccgccaaaccagcaccataattatgaga atgagatgaagcccagcaggatgagttcagatacactcacatcctcaaatccaagggattggagtggtgtatttagcccg cccattgttttcccgggggagagggccgactctacagaggatctctccatcagcagctcgtctccacgcaaagatacatc aagctcagggtctagtagtcctcgtaaagtttacgcccccacatcacaggatcctggtacagatgctggtcatgggacaa tgatgccgtcgaggaccacagtaatggtcttgaaaaggtatggaaaagtgggtgcagtcatggtcttgaaaaggtatgga aaagtgggtgcagtcatagtcttgaaaaggtatggacatggaaagtcatggaatttgccctgggtcttgaaaaggttact acggacagtgaacgacgatggtattatgatggtgaagaatgttcccacggaagttggtaccattttgaaggtaaaatcac gtaaatgtatacataatgcttatattgaaaaggttgcgtttgaagacatcatagcagaacctgatggcattaagagcttg gactgtgtatggtcatgttcctacagatgttttacatgctggaagcagtgtacctacatgatcatgaccaccttgtttgg ctgctgtatagccgctgagtggggtatagagttcgcttacgtggcattttggcacatctggtacgtcactccttgcttca aaatgttggaaatcaactgcggctgctgcaagaagctttacggattatgtgtacattgttgtctggatccactctttgag gcttgtggtttgatgttcaccgcattcaaacgaagtggatga |
|
Protein
| Protein ID | pfu_aug1.0_15541.1_10825.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15541.1_10825.t1 MHGCPSSNVGELDQIPKQCQFATDVSFVSQLINVTKIKHVERFKGGGETHRPVSNMEVDLNASGRRTSLNDSNYHIAFGT KVPGVPNQSKSKVRSPNTSRGAKSQRGAKFENDFHSSDSSSQEDEDIRRKKLPGSRPQSGTSSRPHSGSTSRPHSGNTSR PHSGSTSRPHSGTASKPHSASSRDAASPKGHRQSAVSKSHRKDKHSDGQNFNQVPKFTNVSPELRISTQLPTHRSEVSVN GNSTNRSVSRMNRKSLREIPQDDLRLSVVKSAEKPYNPQAYQMADITESFEAQMFASMKRSAEDAMEDVSIKSPTRVNPP PVVSPRKTPRSTHPGEGTSAHRHIYDFSPTLTSDDDTSLSTWKAPPNQHHNYENEMKPSRMSSDTLTSSNPRDWSGVFSP PIVFPGERADSTEDLSISSSSPRKDTSSSGSSSPRKVYAPTSQDPGTDAGHGTMMPSRTTVMVLKRYGKVGAVMVLKRYG KVGAVIVLKRYGHGKSWNLPWVLKRLLRTVNDDGIMMVKNVPTEVGTILKVKSRKCIHNAYIEKVAFEDIIAEPDGIKSL DCVWSCSYRCFTCWKQCTYMIMTTLFGCCIAAEWGIEFAYVAFWHIWYVTPCFKMLEINCGCCKKLYGLCVHCCLDPLFE ACGLMFTAFKRSG |
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