Gene
| Gene Model ID | pfu_aug1.0_15569.1_18230 |
|---|---|
| Locus | scaffold15569.1 : 1 ... 7987 : + |
| To GenomeBrowser | scaffold15569.1:1..7987 |
| Genes list of scaffold | scaffold15569.1 |
| Synonym | pfu_aug2.0_111.1_03654 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15569.1_18230.t1 | 2 | 1 | Ig_3 | 1 | 71 | 1.6e-13 | 50.9 | 2.8e-08 | 6.0e-05 | 23.4 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 1 | Ig_2 | 3 | 86 | 3.0e-17 | 62.5 | 1.6e-08 | 3.4e-05 | 23.8 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 1 | V-set | 3 | 76 | 1.7e-08 | 34.3 | 1.1e-08 | 2.4e-05 | 24.2 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 1 | I-set | 5 | 84 | 4.6e-11 | 42.4 | 1.2e-08 | 2.6e-05 | 23.9 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 1 | ig | 14 | 69 | 2.4e-07 | 30.7 | 1.5e-06 | 0.0032 | 17.5 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 2 | Ig_3 | 89 | 158 | 1.6e-13 | 50.9 | 1.0e-10 | 2.2e-07 | 31.2 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 2 | Ig_2 | 93 | 171 | 3.0e-17 | 62.5 | 3.1e-13 | 6.6e-10 | 38.9 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 2 | ig | 107 | 156 | 2.4e-07 | 30.7 | 0.0004 | 0.85 | 9.7 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 2 | I-set | 123 | 170 | 4.6e-11 | 42.4 | 2.6e-05 | 0.055 | 13.3 |
| pfu_aug1.0_15569.1_18230.t1 | 2 | 2 | V-set | 141 | 158 | 1.7e-08 | 34.3 | 0.034 | 72.0 | 3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15569.1_18230.t1 | gi|163916355|gb|AAI57653.1| | LOC100135351 protein [Xenopus (Silurana) tropicalis] | 9.0e-13 |
Transcript
| Transcript ID | pfu_aug1.0_15569.1_18230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15569.1_18230.t1 gccagttgtatctacaagcggcaatgtgacggcaaaggagggttctacagtcaatattacctgcatagtccttgaagcaa atccctctatgataatacgctacagttggtacaatagtactgatccttctgttattttaacgataaatcgaacacttact ttgacgccattgcggagatatgattatggattgtacaactgtaaggctgcgaacagtgtcggaccgtccatgtcacctgc atctgtggccgtcactgtacaatataagccaacagtccaaatcactcctcccaggatgacagtaattgtcgatgagatgg acgtagttgtgacctgtagtgttactgatgctaatccgtatccactttcgttcgtctggatgaggagcactactgtcatc agtgttcatcagaactattccatccctgttgtcaacagagagaacgctggtttgtacagctgcatggcaactaacgtagc cggaacatcagactcagcgaatatgtctgttgatgtcctttacgctgacttcataacagatacaaatgcaataaaggaca acggtggcagagtaagtggaattgttggaaaccttgcatctaagaattggacattttcgttattggcaaagaatgctttt ggcattacagctgcagattcttccgctttttgctctgtaaatgctgcaaaaagtgatgaagctgacatagatgatagtgg aagaaccgaaatctgtggcaaatactgtagttattcggataacgtttgcacaaccctaccactctcctcttcttacgaca caaacaagacacctttccggcttgagttaacatcaaacttgtccgccaactttcagaaaggtccctggtacctctcacga ggttttgaacagggtatcaagattcccttcgccacagtcaaccggaatgcaactgctaagatttcctaa |
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Protein
| Protein ID | pfu_aug1.0_15569.1_18230.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15569.1_18230.t1 PVVSTSGNVTAKEGSTVNITCIVLEANPSMIIRYSWYNSTDPSVILTINRTLTLTPLRRYDYGLYNCKAANSVGPSMSPA SVAVTVQYKPTVQITPPRMTVIVDEMDVVVTCSVTDANPYPLSFVWMRSTTVISVHQNYSIPVVNRENAGLYSCMATNVA GTSDSANMSVDVLYADFITDTNAIKDNGGRVSGIVGNLASKNWTFSLLAKNAFGITAADSSAFCSVNAAKSDEADIDDSG RTEICGKYCSYSDNVCTTLPLSSSYDTNKTPFRLELTSNLSANFQKGPWYLSRGFEQGIKIPFATVNRNATAKIS |
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