Gene
| Gene Model ID | pfu_aug1.0_156.1_22031 |
|---|---|
| Locus | scaffold156.1 : 1 ... 36523 : + |
| To GenomeBrowser | scaffold156.1:1..36523 |
| Genes list of scaffold | scaffold156.1 |
| Synonym | pfu_aug2.0_258.1_27130 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_156.1_22031.t1 | 1 | 1 | Histone | 120 | 167 | 7.6e-07 | 29.1 | 5.8e-10 | 1.7e-06 | 28.0 |
| pfu_aug1.0_156.1_22031.t1 | 1 | 1 | RhoGEF | 202 | 355 | 4.3e-10 | 39.7 | 1.8e-13 | 5.4e-10 | 39.4 |
| pfu_aug1.0_156.1_22031.t1 | 1 | 1 | PH | 417 | 520 | 1.2e-09 | 38.3 | 8.6e-13 | 2.5e-09 | 37.2 |
| pfu_aug1.0_156.1_22031.t1 | 1 | 1 | RasGEF_N | 577 | 694 | 5.4e-32 | 109.9 | 2.9e-35 | 8.6e-32 | 109.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_156.1_22031.t1 | gi|260831098|ref|XP_002610496.1| | hypothetical protein BRAFLDRAFT_275769 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_156.1_22031.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_156.1_22031.t1 tgatgggaaaatgatcgaacgacaagatatactggtgtccattgaattgctgaactgcttcgatttcacagcttgcaaca gatggttggatattttactttccagtgtttgtgtacagcaccaggtgaatccgtccctggtggccaaggaggatgcccta cagtatatagagggtctgatcctgaacctcctgggaactctttgtgtttgtcagccccatactgtgcaagatgtccagga cagggtgcagaaaaccttccctgaccctattgataagtgggctatgggagatgccaatgccgctctggagaaaggaaaga aaaactccaatatagtgctaccggaagtcctaggatacaagatagattttcaagtctcactgtacattgtagctgtgctt gagtatattgctgcagacattttgaagctgactggaaagtatgtcagaaaggtaaagcacagtgaaataacatctcagga catcaaagtggcaatatgtgcagaccaggtgctgatggacatgttttcccaggaggaggatgtatccctccctctgatgg aggaacccctagggctgcgtacagaaaagcagacatacgaggatattgttaaggacttcatttttgaggagacacagtat atgagagatcttaatcagatcattaaggtgttccgtgctccttttgtgaagcacttccctcgtagcaaggaccttgaggt gatctttagtaacattctggacatttatgagttcacagccaatctgcagagctcagtggaggaacaggaagaagaattca atgtttatgaaaagtatgttgaggatatgttgcaaccaaggggcaaccagagattgaatacattgctaggacgtaatgac cttagccaaacattagaggctgaaggacatgggtttaaagatgcaatgaaatatgtcttgccaaagctgttattagggcc aatttatcactgtttacattattttgaagtcattaaagctttaagcaatgccagtccctgtgaagaagatcgtgaatgtt tagaacaggccagtggattgttagcctccttaaaagctgtgttagagagaacgtttagtggaaactatcccagagctaaa ccttgggaaacatcgttaagattacaaggaagaacagggcgacaagcggttgtacagaaaatgtcagagttacagagaag tatagatggctgggagggtaaagctatctggcaaagctgctcagagtttatcacagagggtattcttatgaaatatacaa aaagcaagtcatctactgaaaggcatgttttcctgttcgatggattgataattctttgcaagcaaaatctacggaggact tcagtcacaaatccatcgggagaattcaaactaaaggagaaattcagcattcggaaagttgaatttcgggatagggagga tacggaagaaatgaagaactggtttgagatagcaccaaaggaccatcctaacaacagtataacattattggccaaatcac aggaggagaagagtaactggatggctgccttcatcactctacagacaaggagcatgctggagcgaaggttggacagcata ctaaagaaggaagagcaagaaaaacctctgaaactacccccagaagatacatatagatttgctaaagaagattctggaga gaacatagtatttgaagaaaggggatcctccccctctgagagtcccctaatcaaaggagggacgctgctcaagctgatag aacgattaacataccacatgtacgcagatccccagtttgtgagaacattccttaccacctatagatcattctgtacacct gaacagctgctagatctactcatagaaaggttcaatattcctgaccctccggccaacctccagaatgatttgaccaggga tgctgaccataatcagcagattagggatgatctcaaaaggttccgcaaagaatatatcaaaccggttcaatttagagtag tgaatgtactacggcattgggtagaccatcactactatgattttgagaggaaccttgaccttttacacaagcttagggat ttcctaggcacggttaaagggaaagccatgaaaaagatggcagagtcaatcattaaagtgatccgcaggcggtttgaaag tttaagtacagaaagagaaatcacacaccagagtcagcctcctaaaatagaatggcacatagccaggaaaaaggaggaat ttgacctcatgactaataatcagttttgccttttttcagattctggtatagattctgtatcttatgcttcatcaacatta tcactgaatcaagggccacccacccaccctccactgcctagacctacgccagtcaatctacagcccccaccattacctcc acgcaaaaaatatagagactccattaatgacattggattgtcacgctctttgacctccccgattgtgtcagagcccccta ttccacctagaggagcgcctcctgtacccccgagaagagactcgtttcatagtggacaacttcaatcacgtcattcttct ggtcatatttcttgtgcgacactgccacgttgcgcggctttaagtggtggtcgcaacccttcaaatcgtgccacatttcc tgttgaattccataacggaaatggagacgataaaaatagtgatagtgaaatacccaagcttccacctaaaacttatcgga ctcatcaccatacaaggcaaaagagcagttag |
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Protein
| Protein ID | pfu_aug1.0_156.1_22031.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_156.1_22031.t1 DGKMIERQDILVSIELLNCFDFTACNRWLDILLSSVCVQHQVNPSLVAKEDALQYIEGLILNLLGTLCVCQPHTVQDVQD RVQKTFPDPIDKWAMGDANAALEKGKKNSNIVLPEVLGYKIDFQVSLYIVAVLEYIAADILKLTGKYVRKVKHSEITSQD IKVAICADQVLMDMFSQEEDVSLPLMEEPLGLRTEKQTYEDIVKDFIFEETQYMRDLNQIIKVFRAPFVKHFPRSKDLEV IFSNILDIYEFTANLQSSVEEQEEEFNVYEKYVEDMLQPRGNQRLNTLLGRNDLSQTLEAEGHGFKDAMKYVLPKLLLGP IYHCLHYFEVIKALSNASPCEEDRECLEQASGLLASLKAVLERTFSGNYPRAKPWETSLRLQGRTGRQAVVQKMSELQRS IDGWEGKAIWQSCSEFITEGILMKYTKSKSSTERHVFLFDGLIILCKQNLRRTSVTNPSGEFKLKEKFSIRKVEFRDRED TEEMKNWFEIAPKDHPNNSITLLAKSQEEKSNWMAAFITLQTRSMLERRLDSILKKEEQEKPLKLPPEDTYRFAKEDSGE NIVFEERGSSPSESPLIKGGTLLKLIERLTYHMYADPQFVRTFLTTYRSFCTPEQLLDLLIERFNIPDPPANLQNDLTRD ADHNQQIRDDLKRFRKEYIKPVQFRVVNVLRHWVDHHYYDFERNLDLLHKLRDFLGTVKGKAMKKMAESIIKVIRRRFES LSTEREITHQSQPPKIEWHIARKKEEFDLMTNNQFCLFSDSGIDSVSYASSTLSLNQGPPTHPPLPRPTPVNLQPPPLPP RKKYRDSINDIGLSRSLTSPIVSEPPIPPRGAPPVPPRRDSFHSGQLQSRHSSGHISCATLPRCAALSGGRNPSNRATFP VEFHNGNGDDKNSDSEIPKLPPKTYRTHHHTRQKSS |
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