Gene
Gene Model ID | pfu_aug1.0_156.1_22035 |
---|---|
Locus | scaffold156.1 : 80210 ... 92665 : - |
To GenomeBrowser | scaffold156.1:80210..92665 |
Genes list of scaffold | scaffold156.1 |
Synonym | pfu_aug2.0_883.1_11266 |
Manual annotation
Study field | Reproduction |
---|---|
Gene name | myostatin |
Description | NCBI blastp top hit to Chlamys farreri myostatin [ABJ09581.2] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_156.1_22035.t1 | 1 | 1 | TGFb_propeptide | 63 | 274 | 4.1e-27 | 94.9 | 8.2e-31 | 6.1e-27 | 94.4 |
pfu_aug1.0_156.1_22035.t1 | 1 | 1 | TGF_beta | 317 | 415 | 1.6e-23 | 82.9 | 4.8e-27 | 3.6e-23 | 81.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_156.1_22035.t1 | gi|171855265|gb|ABJ09581.2| | myostatin [Azumapecten farreri] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
trochophore | 1 |
>Adult tissues | |
adductorMuscle | 1 |
Transcript
Transcript ID | pfu_aug1.0_156.1_22035.t1 |
---|---|
Definition | - |
>pfu_aug1.0_156.1_22035.t1 atgtattcggtttttcctttgatgttttacttgttttacttagtttcacaatttgagaaatcgcatgttctctcccagca aataagacttgaagatatacaccaatacgacacgtcaaatgttaacgattctgttattagaagtgtttttgcgcaaaatg tagaagcaaacgagactataggaaaccccaggtgtaaatcatgtcatattcgtgaacagcagaagaggaagaggatagaa tcaataaagaacaaaattacacatgctttgaagtttgatattcatggacttccaaacattacagatgcacggattccaag agttccgtcttatcagagattgttagagagatacgatcttatgaacaatgccaatgtacaagcggattcgccctatcggt cctctcttgaagaccaaatggaggaatatggacgtacggaaagaacttatatgctcggaaaatcagttccatcgtggaca aacgtggaggaacgagatacagtttactttgacaccccacagttggtgaatgaagaaattcgtcgggccttattatggat atatgtaaaccctgagaatcaagacttcagagtgccaaataacgtgacagaaatttatctttactcattggttcctcccg gaaaaaatggacgggcacctgttaggaattatttgatgaggagaaaacggagacctcaccaaaccgttgggtggcaccat tttgacattacatggcttgtagctttgtggaccagacatcctagcagaaatttaggactggtagtagaggctaaggacgt caatgattataatatgatcgtattcccaggagccactggtgataattttggactggagccaactttggatatgaaaacag atatctatttaggaacccatcgttcaaagagatcagtaaatttaaggtgcaatgaagaggaccaagtagaatcgtgctgt aggtatccgctaacagttgatttcatcgaatttggatgggattttgtgatagctcctattcgctatgctgcatattattg cgctggcgagtgtgagaatgagcatatggacgaaaatccacatacaagagtactccaggaagtggatcattcgaacactc ctagagcactgccttgttgtactccgacgagattatcgcatttatctatgctttattttgatcatcaagcgagaattcga atgacactgcttcctagaatgaaagttgaaagatgcgcgtgtcagtaa |
Protein
Protein ID | pfu_aug1.0_156.1_22035.t1 |
---|---|
Definition | - |
>pfu_aug1.0_156.1_22035.t1 MYSVFPLMFYLFYLVSQFEKSHVLSQQIRLEDIHQYDTSNVNDSVIRSVFAQNVEANETIGNPRCKSCHIREQQKRKRIE SIKNKITHALKFDIHGLPNITDARIPRVPSYQRLLERYDLMNNANVQADSPYRSSLEDQMEEYGRTERTYMLGKSVPSWT NVEERDTVYFDTPQLVNEEIRRALLWIYVNPENQDFRVPNNVTEIYLYSLVPPGKNGRAPVRNYLMRRKRRPHQTVGWHH FDITWLVALWTRHPSRNLGLVVEAKDVNDYNMIVFPGATGDNFGLEPTLDMKTDIYLGTHRSKRSVNLRCNEEDQVESCC RYPLTVDFIEFGWDFVIAPIRYAAYYCAGECENEHMDENPHTRVLQEVDHSNTPRALPCCTPTRLSHLSMLYFDHQARIR MTLLPRMKVERCACQ |