Gene
| Gene Model ID | pfu_aug1.0_156.1_22035 |
|---|---|
| Locus | scaffold156.1 : 80210 ... 92665 : - |
| To GenomeBrowser | scaffold156.1:80210..92665 |
| Genes list of scaffold | scaffold156.1 |
| Synonym | pfu_aug2.0_883.1_11266 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | myostatin |
| Description | NCBI blastp top hit to Chlamys farreri myostatin [ABJ09581.2] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_156.1_22035.t1 | 1 | 1 | TGFb_propeptide | 63 | 274 | 4.1e-27 | 94.9 | 8.2e-31 | 6.1e-27 | 94.4 |
| pfu_aug1.0_156.1_22035.t1 | 1 | 1 | TGF_beta | 317 | 415 | 1.6e-23 | 82.9 | 4.8e-27 | 3.6e-23 | 81.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_156.1_22035.t1 | gi|171855265|gb|ABJ09581.2| | myostatin [Azumapecten farreri] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_156.1_22035.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_156.1_22035.t1 atgtattcggtttttcctttgatgttttacttgttttacttagtttcacaatttgagaaatcgcatgttctctcccagca aataagacttgaagatatacaccaatacgacacgtcaaatgttaacgattctgttattagaagtgtttttgcgcaaaatg tagaagcaaacgagactataggaaaccccaggtgtaaatcatgtcatattcgtgaacagcagaagaggaagaggatagaa tcaataaagaacaaaattacacatgctttgaagtttgatattcatggacttccaaacattacagatgcacggattccaag agttccgtcttatcagagattgttagagagatacgatcttatgaacaatgccaatgtacaagcggattcgccctatcggt cctctcttgaagaccaaatggaggaatatggacgtacggaaagaacttatatgctcggaaaatcagttccatcgtggaca aacgtggaggaacgagatacagtttactttgacaccccacagttggtgaatgaagaaattcgtcgggccttattatggat atatgtaaaccctgagaatcaagacttcagagtgccaaataacgtgacagaaatttatctttactcattggttcctcccg gaaaaaatggacgggcacctgttaggaattatttgatgaggagaaaacggagacctcaccaaaccgttgggtggcaccat tttgacattacatggcttgtagctttgtggaccagacatcctagcagaaatttaggactggtagtagaggctaaggacgt caatgattataatatgatcgtattcccaggagccactggtgataattttggactggagccaactttggatatgaaaacag atatctatttaggaacccatcgttcaaagagatcagtaaatttaaggtgcaatgaagaggaccaagtagaatcgtgctgt aggtatccgctaacagttgatttcatcgaatttggatgggattttgtgatagctcctattcgctatgctgcatattattg cgctggcgagtgtgagaatgagcatatggacgaaaatccacatacaagagtactccaggaagtggatcattcgaacactc ctagagcactgccttgttgtactccgacgagattatcgcatttatctatgctttattttgatcatcaagcgagaattcga atgacactgcttcctagaatgaaagttgaaagatgcgcgtgtcagtaa |
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Protein
| Protein ID | pfu_aug1.0_156.1_22035.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_156.1_22035.t1 MYSVFPLMFYLFYLVSQFEKSHVLSQQIRLEDIHQYDTSNVNDSVIRSVFAQNVEANETIGNPRCKSCHIREQQKRKRIE SIKNKITHALKFDIHGLPNITDARIPRVPSYQRLLERYDLMNNANVQADSPYRSSLEDQMEEYGRTERTYMLGKSVPSWT NVEERDTVYFDTPQLVNEEIRRALLWIYVNPENQDFRVPNNVTEIYLYSLVPPGKNGRAPVRNYLMRRKRRPHQTVGWHH FDITWLVALWTRHPSRNLGLVVEAKDVNDYNMIVFPGATGDNFGLEPTLDMKTDIYLGTHRSKRSVNLRCNEEDQVESCC RYPLTVDFIEFGWDFVIAPIRYAAYYCAGECENEHMDENPHTRVLQEVDHSNTPRALPCCTPTRLSHLSMLYFDHQARIR MTLLPRMKVERCACQ |
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