Gene
| Gene Model ID | pfu_aug1.0_1562.1_22652 |
|---|---|
| Locus | scaffold1562.1 : 4826 ... 20017 : + |
| To GenomeBrowser | scaffold1562.1:4826..20017 |
| Genes list of scaffold | scaffold1562.1 |
| Synonym | pfu_aug2.0_64.1_13512 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1562.1_22652.t1 | 2 | 1 | Ribosomal_L13 | 7 | 71 | 1.7e-12 | 47.5 | 2.2e-16 | 3.3e-12 | 46.5 |
| pfu_aug1.0_1562.1_22652.t1 | 2 | 2 | Ribosomal_L13 | 119 | 135 | 1.7e-12 | 47.5 | 0.12 | 1800.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1562.1_22652.t1 | gi|76573377|gb|ABA46793.1| | 60S ribosomal protein L13A [Mytilus edulis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| maleGonad | 3 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1562.1_22652.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1562.1_22652.t1 atgttgaagtacctgaaatacctacgtctgagatgcaatgtaaaaccaacacgtggtccattccacttcagggcacctag ccgtatcttctataaggcaatacgaggtatgctgccacacaagttaacacgagggaaggaggccctggctagattaaagg tatttgagggaatcccaccaccctacgacaaacagaagaggatggtcgtaccctcagctcttagagtcaacagactgaat ccttgcaggaaatactgtgatttgaacagacttgcacatgaagttggatggaagtaccagggtgtcatatcaaccttgga agcaaggaggaaagtgaaatcaaagagattccatgataagaagaagcaacttacgttattaagagaaaaggctaaagcaa atgttgcaaagaagacggacaagcaccagaaagtgatcgaggcatatggctacaattaa |
|
Protein
| Protein ID | pfu_aug1.0_1562.1_22652.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1562.1_22652.t1 MLKYLKYLRLRCNVKPTRGPFHFRAPSRIFYKAIRGMLPHKLTRGKEALARLKVFEGIPPPYDKQKRMVVPSALRVNRLN PCRKYCDLNRLAHEVGWKYQGVISTLEARRKVKSKRFHDKKKQLTLLREKAKANVAKKTDKHQKVIEAYGYN |
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