Gene
| Gene Model ID | pfu_aug1.0_15781.1_68900 |
|---|---|
| Locus | scaffold15781.1 : 23811 ... 32455 : - |
| To GenomeBrowser | scaffold15781.1:23811..32455 |
| Genes list of scaffold | scaffold15781.1 |
| Synonym | pfu_aug2.0_515.1_17511 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15781.1_68900.t1 | 4 | 1 | zf-H2C2_2 | 256 | 271 | 3.0e-12 | 46.1 | 0.89 | 2600.0 | -1.0 |
| pfu_aug1.0_15781.1_68900.t1 | 3 | 1 | zf-C2H2 | 260 | 284 | 3.0e-15 | 55.5 | 5.7e-07 | 0.0017 | 18.5 |
| pfu_aug1.0_15781.1_68900.t1 | 3 | 1 | zf-C2H2_4 | 260 | 284 | 8.8e-10 | 38.2 | 8.0e-05 | 0.24 | 11.8 |
| pfu_aug1.0_15781.1_68900.t1 | 4 | 2 | zf-H2C2_2 | 276 | 303 | 3.0e-12 | 46.1 | 5.2e-10 | 1.5e-06 | 28.1 |
| pfu_aug1.0_15781.1_68900.t1 | 3 | 2 | zf-C2H2 | 290 | 314 | 3.0e-15 | 55.5 | 4.6e-10 | 1.4e-06 | 28.3 |
| pfu_aug1.0_15781.1_68900.t1 | 3 | 2 | zf-C2H2_4 | 290 | 314 | 8.8e-10 | 38.2 | 1.9e-08 | 5.6e-05 | 23.1 |
| pfu_aug1.0_15781.1_68900.t1 | 4 | 3 | zf-H2C2_2 | 307 | 329 | 3.0e-12 | 46.1 | 3.3e-10 | 9.7e-07 | 28.7 |
| pfu_aug1.0_15781.1_68900.t1 | 3 | 3 | zf-C2H2 | 320 | 342 | 3.0e-15 | 55.5 | 1.7e-08 | 5.1e-05 | 23.3 |
| pfu_aug1.0_15781.1_68900.t1 | 3 | 3 | zf-C2H2_4 | 322 | 342 | 8.8e-10 | 38.2 | 2.9e-07 | 0.00087 | 19.4 |
| pfu_aug1.0_15781.1_68900.t1 | 4 | 4 | zf-H2C2_2 | 334 | 346 | 3.0e-12 | 46.1 | 0.0027 | 8.1 | 6.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15781.1_68900.t1 | gi|259013470|ref|NP_001158478.1| | buttonhead-like protein [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_15781.1_68900.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15781.1_68900.t1 atggcggccgttatctcaccgtctcagcatcatttttggcagtatccccaacgggagaatatagacactaggctgcttcc attcggacatggaaacctccctgtcagcaatctacaacgtcccctggggcacgaggttgtacgcccaactcccaaccacc ctcggcaaagatggtcgggaaattgtcacatacaagatagagcttttcacgtttcggaaataccatcttcacctagctac ttgcgctctcctttgatgtctttagagcaaattcggactcaacaaaatgagattaatgcaatggaattaatcagaaagga acaattcagttacgaagctcacaatgcgagacttttacgagaaaatattttgattgccgaaagatcgttcgttcctactc cgtctccattaatttccggacatgcgcagtcgctgaatgggcctacatcgccactttctcctcttgtaccacaatcagta aattcggacgttcatgctcaaaaacagatctctccaatacccgcaacggaagcggaaacaccttggtggagtgtgacgtc accagtaagtcctataactcgtgatgtcaaactggaatttggtgtgccgcatcagatgatgtacggacaacgaaatgaaa tacattatagagcacaattagcctctatgtttcagggcgggaaacagttgatagcacctacgcgcaggtgccgaaggtgc aggtgcccgaactgcttaaattcgaaaaattcagacaatccgtcgaagaaaaagcaacatatttgtcatatacccggatg tggaaaggtttacgggaaaacatcgcatctgaaagcgcatttgaggtggcattcgggtgaaagacctttcgtctgcaact ggctattttgcgggaaaagttttacgcgctcagacgaactacaacgccatttgcgaacgcatactggtgaaaaacgattc ggctgtaatgagtgcgggaaaagattcatgcgcagtgatcatctaagtaagcatatgaagacgcatgaaaataaaaagca gaaatcgaacgaacctgaatcaccggaagcggaaacatcaagcacaacggacgatgaagatgaagaaatcgatgttgatg gattagatgacgaatcagacgattgtttcgatgacagcgtttctattgaatcgtcagatttgagacttgactctcaggtt caataa |
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Protein
| Protein ID | pfu_aug1.0_15781.1_68900.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15781.1_68900.t1 MAAVISPSQHHFWQYPQRENIDTRLLPFGHGNLPVSNLQRPLGHEVVRPTPNHPRQRWSGNCHIQDRAFHVSEIPSSPSY LRSPLMSLEQIRTQQNEINAMELIRKEQFSYEAHNARLLRENILIAERSFVPTPSPLISGHAQSLNGPTSPLSPLVPQSV NSDVHAQKQISPIPATEAETPWWSVTSPVSPITRDVKLEFGVPHQMMYGQRNEIHYRAQLASMFQGGKQLIAPTRRCRRC RCPNCLNSKNSDNPSKKKQHICHIPGCGKVYGKTSHLKAHLRWHSGERPFVCNWLFCGKSFTRSDELQRHLRTHTGEKRF GCNECGKRFMRSDHLSKHMKTHENKKQKSNEPESPEAETSSTTDDEDEEIDVDGLDDESDDCFDDSVSIESSDLRLDSQV Q |
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