Gene
| Gene Model ID | pfu_aug1.0_15821.1_03644 |
|---|---|
| Locus | scaffold15821.1 : 14156 ... 28985 : - |
| To GenomeBrowser | scaffold15821.1:14156..28985 |
| Genes list of scaffold | scaffold15821.1 |
| Synonym | pfu_aug2.0_27.1_23276 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15821.1_03644.t1 | 3 | 1 | TPR_11 | 16 | 72 | 1.6e-08 | 34.0 | 8.3e-07 | 0.00094 | 18.7 |
| pfu_aug1.0_15821.1_03644.t1 | 4 | 1 | TPR_2 | 21 | 37 | 6.4e-08 | 31.9 | 0.018 | 20.0 | 5.3 |
| pfu_aug1.0_15821.1_03644.t1 | 2 | 1 | TPR_12 | 21 | 70 | 5.5e-06 | 26.2 | 1.7e-06 | 0.0019 | 18.0 |
| pfu_aug1.0_15821.1_03644.t1 | 2 | 1 | TPR_19 | 22 | 76 | 1.5e-07 | 31.6 | 3.4e-07 | 0.00039 | 20.7 |
| pfu_aug1.0_15821.1_03644.t1 | 5 | 1 | TPR_1 | 26 | 37 | 2.0e-07 | 30.3 | 0.068 | 77.0 | 3.1 |
| pfu_aug1.0_15821.1_03644.t1 | 3 | 1 | TPR_17 | 29 | 62 | 2.0e-10 | 39.9 | 3.6e-05 | 0.041 | 14.0 |
| pfu_aug1.0_15821.1_03644.t1 | 4 | 2 | TPR_2 | 43 | 73 | 6.4e-08 | 31.9 | 2.3e-06 | 0.0027 | 17.5 |
| pfu_aug1.0_15821.1_03644.t1 | 5 | 2 | TPR_1 | 48 | 73 | 2.0e-07 | 30.3 | 2.0e-06 | 0.0023 | 17.4 |
| pfu_aug1.0_15821.1_03644.t1 | 5 | 3 | TPR_1 | 90 | 101 | 2.0e-07 | 30.3 | 0.02 | 23.0 | 4.7 |
| pfu_aug1.0_15821.1_03644.t1 | 3 | 2 | TPR_11 | 91 | 161 | 1.6e-08 | 34.0 | 0.0011 | 1.3 | 8.7 |
| pfu_aug1.0_15821.1_03644.t1 | 4 | 3 | TPR_2 | 91 | 101 | 6.4e-08 | 31.9 | 0.23 | 260.0 | 1.9 |
| pfu_aug1.0_15821.1_03644.t1 | 3 | 2 | TPR_17 | 128 | 143 | 2.0e-10 | 39.9 | 0.023 | 26.0 | 5.3 |
| pfu_aug1.0_15821.1_03644.t1 | 2 | 2 | TPR_12 | 130 | 185 | 5.5e-06 | 26.2 | 0.029 | 33.0 | 4.4 |
| pfu_aug1.0_15821.1_03644.t1 | 5 | 4 | TPR_1 | 133 | 143 | 2.0e-07 | 30.3 | 0.98 | 1100.0 | -0.6 |
| pfu_aug1.0_15821.1_03644.t1 | 4 | 4 | TPR_2 | 134 | 162 | 6.4e-08 | 31.9 | 0.16 | 190.0 | 2.3 |
| pfu_aug1.0_15821.1_03644.t1 | 5 | 5 | TPR_1 | 157 | 169 | 2.0e-07 | 30.3 | 0.95 | 1100.0 | -0.5 |
| pfu_aug1.0_15821.1_03644.t1 | 3 | 3 | TPR_11 | 158 | 186 | 1.6e-08 | 34.0 | 0.0015 | 1.7 | 8.3 |
| pfu_aug1.0_15821.1_03644.t1 | 2 | 2 | TPR_19 | 159 | 183 | 1.5e-07 | 31.6 | 0.002 | 2.2 | 8.6 |
| pfu_aug1.0_15821.1_03644.t1 | 3 | 3 | TPR_17 | 160 | 187 | 2.0e-10 | 39.9 | 1.1e-05 | 0.013 | 15.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15821.1_03644.t1 | gi|156391155|ref|XP_001635634.1| | predicted protein [Nematostella vectensis] | 5.0e-40 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
| adductorMuscle | 2 |
| maleGonad | 2 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_15821.1_03644.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15821.1_03644.t1 atgaacccatgtggcgataatttatggatttatggaattacagaggaatgtatagatcgatttgagtatgaagttgccca gaaattctgtcagagagcattggagcaggaagcagacaatgtgcgagctttagagacatcaggaaacttactcctggaac tcggcaacaatgaggcggcaaaacagtgctttggtagagccgtggaagtcagtccagatgttggttacagtaaatacatg actctcggtcagctaatggagggatccagtgctgtacagtgtttccagaaaggcatagagctcatggtggcagagaggga gaaacaaagtgcacaggagttatcagcggcctgcgggggtcatgaggaggatgccgtttctgacaaggatatatctaacg cctactgcgctatggctgaaatctacatgacagatctatgttttgaggaggaagcagaagtgaagtgtgagaatgcaata aaagaagccataaaagctgactctaataattcagaggcccttcagcttatggctagcttctatctctctaaggagaaaaa agagatatacaccaaggtgaaatgtgaagatggggagctgttaaaacatgtagaagaactactccttgagctaggaccag gagatgaggatgatgatgaagaggggggagatgtagtaggagaagatggtgctgaccttgacattgatagtgataatgaa agtgaaactgaaaacatggagcattga |
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Protein
| Protein ID | pfu_aug1.0_15821.1_03644.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15821.1_03644.t1 MNPCGDNLWIYGITEECIDRFEYEVAQKFCQRALEQEADNVRALETSGNLLLELGNNEAAKQCFGRAVEVSPDVGYSKYM TLGQLMEGSSAVQCFQKGIELMVAEREKQSAQELSAACGGHEEDAVSDKDISNAYCAMAEIYMTDLCFEEEAEVKCENAI KEAIKADSNNSEALQLMASFYLSKEKKEIYTKVKCEDGELLKHVEELLLELGPGDEDDDEEGGDVVGEDGADLDIDSDNE SETENMEH |
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