Gene
| Gene Model ID | pfu_aug1.0_1589.1_29779 |
|---|---|
| Locus | scaffold1589.1 : 1 ... 14517 : + |
| To GenomeBrowser | scaffold1589.1:1..14517 |
| Genes list of scaffold | scaffold1589.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | I-set | 35 | 126 | 0.0 | 216.8 | 2.9e-22 | 3.9e-19 | 68.3 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | Ig_2 | 44 | 119 | 3.3e-22 | 78.3 | 1.4e-09 | 2.0e-06 | 27.8 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | V-set | 46 | 114 | 8.9e-07 | 28.7 | 0.0065 | 8.8 | 6.2 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | BiPBP_C | 50 | 95 | 9.1e-12 | 44.7 | 0.00017 | 0.22 | 11.4 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | Ig_3 | 57 | 113 | 4.6e-15 | 55.8 | 6.8e-06 | 0.0091 | 16.4 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | ig | 58 | 108 | 1.1e-08 | 35.0 | 0.00016 | 0.21 | 11.7 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 1 | C2-set_2 | 59 | 75 | 2.3e-08 | 33.8 | 0.00054 | 0.73 | 9.7 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | I-set | 202 | 292 | 0.0 | 216.8 | 3.3e-22 | 4.5e-19 | 68.1 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | Ig_2 | 211 | 288 | 3.3e-22 | 78.3 | 1.2e-08 | 1.6e-05 | 24.9 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | BiPBP_C | 217 | 284 | 9.1e-12 | 44.7 | 7.5e-05 | 0.1 | 12.5 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | Ig_3 | 224 | 279 | 4.6e-15 | 55.8 | 1.0e-05 | 0.014 | 15.9 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | ig | 225 | 274 | 1.1e-08 | 35.0 | 0.0015 | 2.0 | 8.6 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | C2-set_2 | 226 | 242 | 2.3e-08 | 33.8 | 0.00021 | 0.28 | 11.0 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 2 | V-set | 255 | 287 | 8.9e-07 | 28.7 | 0.0078 | 11.0 | 6.0 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | I-set | 399 | 489 | 0.0 | 216.8 | 3.0e-25 | 4.0e-22 | 77.8 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | BiPBP_C | 405 | 458 | 9.1e-12 | 44.7 | 0.0011 | 1.5 | 8.7 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | Ig_2 | 412 | 489 | 3.3e-22 | 78.3 | 1.2e-07 | 0.00016 | 21.7 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | ig | 415 | 471 | 1.1e-08 | 35.0 | 0.00048 | 0.65 | 10.1 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | V-set | 418 | 482 | 8.9e-07 | 28.7 | 0.00075 | 1.0 | 9.2 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | Ig_3 | 421 | 476 | 4.6e-15 | 55.8 | 8.8e-07 | 0.0012 | 19.3 |
| pfu_aug1.0_1589.1_29779.t1 | 3 | 3 | C2-set_2 | 424 | 444 | 2.3e-08 | 33.8 | 0.0015 | 2.0 | 8.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1589.1_29779.t1 | gi|291240031|ref|XP_002739924.1| | 2.0e-40 |
Transcript
| Transcript ID | pfu_aug1.0_1589.1_29779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1589.1_29779.t1 gaaatttgctgaagatgtcgcacctgaagaagtaacagaggaagtacccgagacagaacaacttgacttccgacatgtcc tcaaaaaggttgaaggtacagcgccccaatttgtggtcaccatagaggatgccaaggctcccgaaggagaatctgtcaag ttcatcacaaaggtcaaaggtgaacctactcctgaggtcacatggtaccatgacaaccaaccaatcaaagatgaccagga aatctacaagattattcctggagaagaaggggaggtaatccttgaacttcctgaagttttcccggaggacgctggagaat atacagtacaggccgtcaatgaacacggacaaatctcttgtacagcggtactttctgttttaacagaagaaattttggag gcagaaattcttgagaaagcccctgaagaagaagctccaatcaaacctcatacaatgccagatgcggaacaactggactt cagggatactctcaaaactcaagttaaattcagtgaagacgtcacaggagaggaaactgtaaagactatctatgaagctg aacaggtggactacagggacgttctcaaacaggtgcctggagctcctgaatttgtggtcaccatacaagatgccaaggcg cccgaaggagaacctgtcaggttcgtcacaaaggtcaaaggtgaacctgctcctgaggtcacctggtaccatgacaacca accaatcaaagatgacgaaatctacaagattattcctggagaagaaggggaggtaattcttgaattacctgaagttttcc ctgaagactctggagaatacactgtagaagccgtcaatgagcatggtcaaatatctgctacagctgtacttactgtcctc acagaagaactagaggaggttaaagagatggtgaagccacaagaagactctgtagtggaaacaccagtcaaacctcatac catgcctgatgctgaacaactagacttcagggcagctctcaaaacacaagtgaagactaaagtaaacgtaacatatgagt acgagcaattggacttcagatctgtgctgaaaaaatcgactgttacagccagtaaatttgctgaggatgttacaacagag gagaccttcaccatgacagagactgaagaaatcaaacaaatcacagaaacggttgaagacattgtactgatatctcctga atttgtaaagagaattgatgacatgaagaccatagaaggagaacctgtcaaatttgttaccaaggttaccggtgaaccca agccagaggtcacatggtaccatgacaaccagatcatcactgacgatgaaatctacaagatagaggagagtgaggaaggg gagataacccttgttataggcgaggcgttccctgaggatgctggtgtatatacagtacgggctaaaaacgatgctggtca agtagaggcgactgccatgcttactgttacagatattatagactctgaggaatactccggcggggaatatgacgtagatg atgaaatgatcgtacacgaagatgtagagcagtactcacccatggacttcatggcacgtgactttgtactggagactgtc ccagaagaaacttctctcgatacgtcagagaacgacataacgttggaggaccagccggacgtaccagaggaggaaatcca aggtcacggcaccatcaagatgtggaatattaatcaaaacttgatcatatatcggtag |
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Protein
| Protein ID | pfu_aug1.0_1589.1_29779.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1589.1_29779.t1 KFAEDVAPEEVTEEVPETEQLDFRHVLKKVEGTAPQFVVTIEDAKAPEGESVKFITKVKGEPTPEVTWYHDNQPIKDDQE IYKIIPGEEGEVILELPEVFPEDAGEYTVQAVNEHGQISCTAVLSVLTEEILEAEILEKAPEEEAPIKPHTMPDAEQLDF RDTLKTQVKFSEDVTGEETVKTIYEAEQVDYRDVLKQVPGAPEFVVTIQDAKAPEGEPVRFVTKVKGEPAPEVTWYHDNQ PIKDDEIYKIIPGEEGEVILELPEVFPEDSGEYTVEAVNEHGQISATAVLTVLTEELEEVKEMVKPQEDSVVETPVKPHT MPDAEQLDFRAALKTQVKTKVNVTYEYEQLDFRSVLKKSTVTASKFAEDVTTEETFTMTETEEIKQITETVEDIVLISPE FVKRIDDMKTIEGEPVKFVTKVTGEPKPEVTWYHDNQIITDDEIYKIEESEEGEITLVIGEAFPEDAGVYTVRAKNDAGQ VEATAMLTVTDIIDSEEYSGGEYDVDDEMIVHEDVEQYSPMDFMARDFVLETVPEETSLDTSENDITLEDQPDVPEEEIQ GHGTIKMWNINQNLIIYR |
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