Gene
| Gene Model ID | pfu_aug1.0_15919.1_03656 |
|---|---|
| Locus | scaffold15919.1 : 12715 ... 30855 : - |
| To GenomeBrowser | scaffold15919.1:12715..30855 |
| Genes list of scaffold | scaffold15919.1 |
| Synonym | pfu_aug2.0_348.1_27260 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_15919.1_03656.t1 | 2 | 1 | PHD | 92 | 139 | 7.7e-18 | 63.9 | 1.8e-16 | 6.6e-13 | 48.1 |
| pfu_aug1.0_15919.1_03656.t1 | 1 | 1 | JmjC | 143 | 259 | 1.30321e-43 | 147.8 | 0.0 | 2.8026e-43 | 146.7 |
| pfu_aug1.0_15919.1_03656.t1 | 2 | 1 | zf-C5HC2 | 270 | 289 | 2.2e-21 | 75.6 | 0.028 | 100.0 | 3.0 |
| pfu_aug1.0_15919.1_03656.t1 | 2 | 2 | zf-C5HC2 | 349 | 402 | 2.2e-21 | 75.6 | 5.9e-25 | 2.2e-21 | 75.6 |
| pfu_aug1.0_15919.1_03656.t1 | 2 | 1 | PLU-1 | 413 | 483 | 0.0 | 267.0 | 5.5e-18 | 2.0e-14 | 53.2 |
| pfu_aug1.0_15919.1_03656.t1 | 2 | 2 | PLU-1 | 482 | 702 | 0.0 | 267.0 | 0.0 | 0.0 | 219.4 |
| pfu_aug1.0_15919.1_03656.t1 | 2 | 2 | PHD | 795 | 841 | 7.7e-18 | 63.9 | 6.2e-11 | 2.3e-07 | 30.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_15919.1_03656.t1 | gi|348552013|ref|XP_003461823.1| | PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5A [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_15919.1_03656.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15919.1_03656.t1 atgagcttaagtattatcagaaatgcttttccagttaaagaatttaaaagagaattatcaaaaatcaacaatattcagaa atccaagcttgacatagattacaatgtgaattcagagctgaagaagctacagttctttggagctggaccgaaagctgcag tgccacctgttggagaggttaaagaagagaaacctgaagaaaaaccaacaaagggagtgaacactcgtcacaaaaaccct ggtcctggcgcttataccaccgtggatttgtacatctgccatatgtgtaaccgtggtgatggagatgagtatatgttgct atgcgatggttgcgatgatgctttccacacatactgtttgattcctcccttaccagaggtacctaagggcgattggagat gtccgaaatgtgtagctcagattccttggtgttatgtaggaatgtgcttctctagtttctgctggcataatgaagatcac tggagttactccattaactacatgcactggggtgaacctaaaacttggtacggtgtaccgggagagaaggccgatctgtt tgaggaggtgatgaagaagacggcaccagagttgtttgaacagagtcctgatttactacatcagctgaccaccattatga accctaacatactcatggagcatggagtacctattgttcgtacaaaccaacacgctggagaatttatcattacattcccc cgtgcctaccatgcaggatttaaccagggatataactttgctgaagctgttaactttgctcctgctgactggctcccgat tggtcgtgcctgtattgagcattacagatctttgtgccgacagtgtgtcttttctcatgaggagttgatctgtaagatgg ctgccgacccagatagcttagatctcaaaatagctgctagtacccacaaagatctactagctattgttgaaagagagaag agactgcgtaaaacactcttagacaaaggaacaactgaggcagagagagaagcatttgagctgctacctgacgatgagag acagtgtgacttctgtaaaaccacatgcttcctgtctgctatcacctgctcctgtaaaccaaacaaggtagtatgcctgg atcatgtggagaaattgtgtaactgtcagccgtctgagcattgtctgcgatacaggtatacccttgatgagttacccaca atgctgcaccgtcttaaggtacgggcggagtcttatgataactggaacaacaaagtacgggctgcactggaggcagtggg tgatgagaaactagacatacaagatttgaaggagtacatcagtgaggcagaggagaagagattcccagactcagaccttc tacagaaattgtcaaacgctgtgaatgaagccgagaaatgtgctagtgtagcggctcaactcgtgtcaaagaaagttaga acaagtgtgacacagtatcagaaggaatctcaggaggccctagatgccgagacacctgactcggaaaaactcgaaaaact catcgagtttagtgccacactggatgtagatctacccgaaatacccaggctcaaacaggtattacagcaggccaaatggt tagacgaggtcaggaactctctcctggaacctgacaatgttacactagacgtcatgcgtaagatgatggagtcaggcgtc ggcttggctccccacccagcagtggagaaagctatggcagagctgcaggaactccttatggtcagtgaaagatgggagga gaaagcaaggatttgtctgcaagcaagaccaagacatgtgatggctacactagaggcaataatcaatgaagctaaaggaa tccctgcctacctacctaatgttagtgctctgaaagaagccctgaagaaagccaaggaatggacacagaaagttgatgca gtacagaattcggactcttacccatacttggatgtattggaagcccttgtcaacaaggggagaccaatccctgtcagact ggatcaacttcctcaggtggagtcccaggtagctgctgccaagtcctggagagagaggactgcacggacattcctcaaga aaaactctacttactctctgttagaggtgctgtcaccacggtctgacataggcacgtatagcagtgctttgtcaggatct gcagcttccgacttagatagaatccgagctctaatagagttaagtcctgacaaaatgaagaaactagacaaacccaagaa aaagaagacaaaagtcaagaaggaaggaggagaggaaggagagaagaaaaaacgaaaacctcgtaaaaagaaggagaagg aatgcttgataatggtagatgaagacgatgataataatgatgaggactgtgcagcaattaaatgtctgagaccaacaggt gaggaggtgaactgggtgcagtgtgaccgctgtgaagagtggtatcacctgttatgtgtgggactcagctctgaagaaat tacggaagatgaagaatatgagtgctttaaatgtaaaaacaaaaatatttcctctccgtttctatctcctgggatcacaa gtacagatagccattcttccctaacccctaacacctctaacattgatgttactgacactgaacaaccgtttattcctcca gcagctagagtgccatcaaactttgacaatgacggagaagttgacatggaatcatttgaatctcctattattaaaagtgc cgataatttatccgtggattcactgagaagtagtgctgacagttccgatttcttgacatcagcagttaccaccatgcaaa catccatcagtaaaatccccgagactttaccgagtgacgtcatgcacaatgatagcggggaatcgcaggaaagtgtttca caagatttaataacgactgaatctgcatgtgagcaaagtattgttacagacaaagttacaacaacagaagtgcaaagtct aaatgatgggatgtcacagcccaatttagttactcaggactccggtgtggccgatttagagcaagttgttgaaatggaaa ttgaaaacaattatggaacagaagtagaaccggaacaaaacacagaaactgaagtagaatctgtcctccctgaagtgtcg acagaggacgctagtaaaaccatatctgtgataccctcacctgtaacaaatctctccgatcatcagacagaagacacatc aacagaaaaaagtcaagatttattggatgaaataacttcatag |
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Protein
| Protein ID | pfu_aug1.0_15919.1_03656.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_15919.1_03656.t1 MSLSIIRNAFPVKEFKRELSKINNIQKSKLDIDYNVNSELKKLQFFGAGPKAAVPPVGEVKEEKPEEKPTKGVNTRHKNP GPGAYTTVDLYICHMCNRGDGDEYMLLCDGCDDAFHTYCLIPPLPEVPKGDWRCPKCVAQIPWCYVGMCFSSFCWHNEDH WSYSINYMHWGEPKTWYGVPGEKADLFEEVMKKTAPELFEQSPDLLHQLTTIMNPNILMEHGVPIVRTNQHAGEFIITFP RAYHAGFNQGYNFAEAVNFAPADWLPIGRACIEHYRSLCRQCVFSHEELICKMAADPDSLDLKIAASTHKDLLAIVEREK RLRKTLLDKGTTEAEREAFELLPDDERQCDFCKTTCFLSAITCSCKPNKVVCLDHVEKLCNCQPSEHCLRYRYTLDELPT MLHRLKVRAESYDNWNNKVRAALEAVGDEKLDIQDLKEYISEAEEKRFPDSDLLQKLSNAVNEAEKCASVAAQLVSKKVR TSVTQYQKESQEALDAETPDSEKLEKLIEFSATLDVDLPEIPRLKQVLQQAKWLDEVRNSLLEPDNVTLDVMRKMMESGV GLAPHPAVEKAMAELQELLMVSERWEEKARICLQARPRHVMATLEAIINEAKGIPAYLPNVSALKEALKKAKEWTQKVDA VQNSDSYPYLDVLEALVNKGRPIPVRLDQLPQVESQVAAAKSWRERTARTFLKKNSTYSLLEVLSPRSDIGTYSSALSGS AASDLDRIRALIELSPDKMKKLDKPKKKKTKVKKEGGEEGEKKKRKPRKKKEKECLIMVDEDDDNNDEDCAAIKCLRPTG EEVNWVQCDRCEEWYHLLCVGLSSEEITEDEEYECFKCKNKNISSPFLSPGITSTDSHSSLTPNTSNIDVTDTEQPFIPP AARVPSNFDNDGEVDMESFESPIIKSADNLSVDSLRSSADSSDFLTSAVTTMQTSISKIPETLPSDVMHNDSGESQESVS QDLITTESACEQSIVTDKVTTTEVQSLNDGMSQPNLVTQDSGVADLEQVVEMEIENNYGTEVEPEQNTETEVESVLPEVS TEDASKTISVIPSPVTNLSDHQTEDTSTEKSQDLLDEITS |
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