Gene
| Gene Model ID | pfu_aug1.0_16.1_07294 |
|---|---|
| Locus | scaffold16.1 : 302672 ... 329025 : - |
| To GenomeBrowser | scaffold16.1:302672..329025 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug2.0_1582.1_08458 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16.1_07294.t1 | 3 | 1 | Gelsolin | 892 | 918 | 8.8e-18 | 63.7 | 0.15 | 2200.0 | -1.6 |
| pfu_aug1.0_16.1_07294.t1 | 3 | 2 | Gelsolin | 1657 | 1710 | 8.8e-18 | 63.7 | 2.9e-13 | 4.2e-09 | 35.9 |
| pfu_aug1.0_16.1_07294.t1 | 3 | 3 | Gelsolin | 1787 | 1828 | 8.8e-18 | 63.7 | 2.2e-09 | 3.2e-05 | 23.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16.1_07294.t1 | gi|260786469|ref|XP_002588280.1| | hypothetical protein BRAFLDRAFT_124711 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16.1_07294.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16.1_07294.t1 atgcagttttatcaggtctcatctgccatttccaaattttccggcgataataagtctgacaaaagcgaaagtagcaaacc ggaagtgagtccgcgtagaatagcaagaagaaacgatttctcttcgttgcttcagaaattttcaggatctgatcagtcaa gttcagaaaacgaacaaagttctacgtcacacaggaagtcgaatcttcggaggcaagaggcgtatacgataactagtagc gatgattccgaatcgcgaaggactcccgaacgttctcagagcctgcgcgtgaaaaaatctccctcgcccgagaagggtat acagagatcggaaagtttccggtccgagtttatgaaaagacgatatagtcctgaacccaaaaatcgaattcctttacccg aggaaaaaccggaaacaaaattaccagaagaagcggaacaggaagtgatagcggacgaggaaatggcgcaaccttcaccg gaactagcagccgttttaagcagacgacagaaagtcgttactgaacaacaggcgaaaggagaagtggaagaaagggagag aattcatagtaaagttatcgagaaggaagagaaaataggtcatacagcggacgttgaagaagttatagccgacgcagaag tcgcttctgccttaaaaagcagacggcacttcaaagaaaatttggaaaaatatgacaatttggaaaagaaagatgacatt gtacgttcagatcataacaatgtagaggaagttatcgcagactcagaagtcgctagtcttttaaaggcacggagaaaaga aacagatgaacatgtaaaaaccgaggaaagtaaaacacggactaagaaggaagcggaaaatgtttcaaaatcttcttcat ctcatgaatcttcgaaaacttcattaagcaaacctcatgacaaagacgcgtcgtctgcaaaatcttcagtcgattttgaa aagaagtcagcagtttcaaatcatcaagtgtcaaaaagtgttaaatcgggctctgaaagtcatcttaatacgaatttaac aagtaaagattccaaagataattcaaaacgtgtaaaaagtgttatatcgtcgaaaaatgtacaagatgaaagtgatactc atcatgctaatcaagccacattctcgtctgccagagttgtcaagaaaattgtgtcgtctgctgccggcgaatctgacagc gcgagctcaagtgcttcagaagccaagtcatctccggacaggtcggtccggagtcgtttctcgcccctgaaggacacaat ctcaggtgatatctcttccaagagctcctcttctttatcgtcttcatcttcatcaacacttaggcgaacagaatctcaca aactgaaggaatctgaaaagccgcaggggattttgaagcggacatcttcggtcaagaaggccggagtgatagtggacgct gaattggccggtatcctccagaggcggcgccagaaggagggagacgtggacgaagaggaggtggctgtcagcacggtaca ggacgagatcgaggaaaccagaagctcggaactccgtgaaagctgcttcagcaccgacttgcgtgaacgtgaacattcca agagcagcgaagcagaggaggatggcgtttccggtatgtccattgcggagcggatatttcacatgcagacacgactagag gaggctaaatcatgtccgataactccgaaagctaatctgtcaggggcggcaactccaaaaatatctgttcttggaagggc cggaagtctaacatccggaacatccttgagctttgacgattccagcgacagtaaatcccgagtatcaggggaacagctga tagagcgtctttctgacattgcagacaaggagtttccggtcgtcgccgagaagcgagcgttgtttcagcgccggaagcgg gatgactggcgcacgcgcactcagccagtaactcaagaggaaattcaggaagccgatggggccgaagtcttacgcagatc ttctacggatgtgtttgagaaaacaaccagacgagccgattcacccgacacaaaatcagaattcccccagcatctgcccc atccccaggggaaaatttcaaggaatgaacgacgtaagacacttcctgttacggctgcggaattaaacgcaataccggaa gggcagttggcgccaatttcaaaattacagaaattgacagacgacaaagggtaccgggattccagggcggattcaggaat tttgtctggttcctctgatattgagaactattgtgactcattagaaagagagcaccacacatcggcagatagtcttagaa gtttaggggtcgacatggaagtaagcgaagatgaccccgcaagaatgagcgtttcagccaaggcttccctcttcaaacaa ttcgaagaaaaagcgaaaacggaaaaaccgaagtcgtctgcgagcggcgccaaacgttacatcgacaggaagaagaggga gcgttctagaacccaacctataacagaggatgaagtcaaaactgccgcggaaatagcagacgatgaagcgcaaggtgatc agaaaccggaagacaaggcagaggaaattcagaaagagattgaagaaagaaagcagacggaagatgaaaaattagcggac gaactctcaaggaaaagtcttgcagacaaagtgaaacttttctctactctcaaagaaaaggaaaaggaagaagaaaagaa gagggagccacctgtagtccgccggaaaaaccggaaactagcatccaggtttaatactcagcccgtaacggtagaagagg tagaaaaggcagcagcgtaccgcgtatcaccgctcgccatgagcttggtcaaacctcccgatccagagatgctgaaaggg ctctcaatgagcgctcagaaggaaataatggctcaacacgcggaaatggtcatgtcacagccaagttcaagatcaaactc acgccatggatcatccattgatttaacaggagattcaagcaaagggaaagagaaggaggaagtaaccaaaaacggggtaa aatctgcagacgatattgatgaaactaaaaaggcgggaaaagaagtgaacggagacgttagcaagaaaaataccgaggaa aaaagttcacggaaagacgtcaaagtgttacccggattaaacgtggaaacccacgaggaactgaaacggttgatgttaaa gaaaagtatggaacgcgaaacggaccaaaaaggaattctgaaggagtcgtcgccggaatcgaaagaaggcaaccatgatg tcaacggtgaacataaaggaattttacgggcgacagaaatcgcggcggaaattaagtccacaagtggaattttgaaacac gcggaaaaagaatctgaaaaagaggataaaagtgtggaaccaaaaagtattctgaaaaaggaaggtagttttgagatcgc gaaaattgaaccggaaaagggagttcttaaagatagtacttttgaaactatcaaagaaccagagaaaagtgcacttaaag acagttccttcgaagtttcaaaagaaccagaaaaaggagtgttgaaagaaagtacgttcgaacgaccgaaatcggaaccg gaaaagagtgttttaaagaaatcaactgcgcaagcagaggaagcggaagtaagtggaatattgaagaaaaccgatgacga gagctcagacatcattgcatcaaatataacttcaaacagagtggaagaaattaaagcggaaaagccggaaaaggagaaat cgccggagagacaggcaggggacaagaagggggcaggggcgtgtgccagtgctatcagacggaggggtcgggatgacaag caacctgaaaggtatttgacccagcccgccgagaccgagaagccggagaaatcgcccgacactgcccgaaagatgaagta cggcgccgtgagacacaaaacccagcctgtgacacccgaggaaaaaagggaggccgagggacaacccgagaagggaagct cactgaaagacaggttgagcatgctgaagaagagtggagaggaagactggaagaaacgtgtatcacgtcaactagaatat gacagcgcaggaagtgcagggtcaagtccagaggtgaaaagacgggagaaaaaacttgacttgccgcgtccctccagtat tgcagacagacttaatctcctggaaaacgcacaggagggatggaggggaagggtggaagaaaaagatgcaaagaaattca cagtagctcataaacttgctggccaagtagaggagagccccctggtgaggaagctgaaagagagaactaagagagaatcc gagagcgaacaatcgagttctgaattaacgtcaccttcaaccccgacaagagaaagttccaaaatcccccttcctaccac tatcatttcgggtccgcctgtagagagaccaacatcagagccggtcaaggtcgttgccaaggaaacggaagaagacgaga ctcccaaaggtcctgtaaaggtcgccattccatcaatggacgatgaacatctacagtcgtttttccagaccaaagaagtg tcagaggtcatatctgagaaagttgacgtcactatcgatgattttaacgagctcttcattatcgctaatgagtttttacc tgccacaaggaagataagaccgaaacgtaaacacacggcacgaagtaaaaatccgttaaaaacgatgtcgacgacggtag agataaaaaccgagtatgaagaagtcaccaccggagtggcagagatggaactaaaacggatgaaaacagcatctattgcc aaagatgccggttttgcccaagcggccttagcagggctggcaagcaaggagaattttgccaaagttgagctgcggaaaac gaatgacacttctactagaaaatctccggctaggctggacccatacaaagatctcatgttgatccatgtcaaaggacgta gacgtacccaggttaggcttgtagaaccaagttcaaagtctataaatagtggagactgctacatcctggttactccagac aaactcatcaactgggtcggagaattctcaaacgtcattgagaaagccaaggcagcagatgtagcttcctttatcaacca gaagagggatatgggatgtaaagccagtattgtggagacagtggaggaagcccgacatcatctgggcacgggcaaaaagt tctgggctgccattggaggaatgggcactatagcttctgcgggaccgacggaagaggatgagttatatgagaaccacata gtagaaaccaacatggtgtacagattacaggacaactctctggtaccgtacaaagaatactggggtgccgtaccaaaata tgaaatgctcaataaaaatgaggttttcgttttcgactttggaagcgagttatacgtctggcagggaaaagctgtcaagc ctgatcagaggaaattaggagtgaagctggcgcgtcaactttgggagaaaggttatgactatactgcatgcgatgtcaac ccagtctgtccgttgttgactgaggaatctggaggtctagctgccaaaggcacagaacgtccctcgtgggcgttgttcgg aaaagtcaatcaaaatatggagactatactgttcagagagaagttttctgattggccggatacgtcccgactaataaagg tcaagagtacggaggatgtgtcagggagtaagactgatttagccgacctgaaggcgtatgatgccagtttgatgattcct gtaaacaccaagccagtgtcattagtcctagagggctccaatgtgggcaggggtaaagaatggtacgtacaatgtatatg a |
|
Protein
| Protein ID | pfu_aug1.0_16.1_07294.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16.1_07294.t1 MQFYQVSSAISKFSGDNKSDKSESSKPEVSPRRIARRNDFSSLLQKFSGSDQSSSENEQSSTSHRKSNLRRQEAYTITSS DDSESRRTPERSQSLRVKKSPSPEKGIQRSESFRSEFMKRRYSPEPKNRIPLPEEKPETKLPEEAEQEVIADEEMAQPSP ELAAVLSRRQKVVTEQQAKGEVEERERIHSKVIEKEEKIGHTADVEEVIADAEVASALKSRRHFKENLEKYDNLEKKDDI VRSDHNNVEEVIADSEVASLLKARRKETDEHVKTEESKTRTKKEAENVSKSSSSHESSKTSLSKPHDKDASSAKSSVDFE KKSAVSNHQVSKSVKSGSESHLNTNLTSKDSKDNSKRVKSVISSKNVQDESDTHHANQATFSSARVVKKIVSSAAGESDS ASSSASEAKSSPDRSVRSRFSPLKDTISGDISSKSSSSLSSSSSSTLRRTESHKLKESEKPQGILKRTSSVKKAGVIVDA ELAGILQRRRQKEGDVDEEEVAVSTVQDEIEETRSSELRESCFSTDLREREHSKSSEAEEDGVSGMSIAERIFHMQTRLE EAKSCPITPKANLSGAATPKISVLGRAGSLTSGTSLSFDDSSDSKSRVSGEQLIERLSDIADKEFPVVAEKRALFQRRKR DDWRTRTQPVTQEEIQEADGAEVLRRSSTDVFEKTTRRADSPDTKSEFPQHLPHPQGKISRNERRKTLPVTAAELNAIPE GQLAPISKLQKLTDDKGYRDSRADSGILSGSSDIENYCDSLEREHHTSADSLRSLGVDMEVSEDDPARMSVSAKASLFKQ FEEKAKTEKPKSSASGAKRYIDRKKRERSRTQPITEDEVKTAAEIADDEAQGDQKPEDKAEEIQKEIEERKQTEDEKLAD ELSRKSLADKVKLFSTLKEKEKEEEKKREPPVVRRKNRKLASRFNTQPVTVEEVEKAAAYRVSPLAMSLVKPPDPEMLKG LSMSAQKEIMAQHAEMVMSQPSSRSNSRHGSSIDLTGDSSKGKEKEEVTKNGVKSADDIDETKKAGKEVNGDVSKKNTEE KSSRKDVKVLPGLNVETHEELKRLMLKKSMERETDQKGILKESSPESKEGNHDVNGEHKGILRATEIAAEIKSTSGILKH AEKESEKEDKSVEPKSILKKEGSFEIAKIEPEKGVLKDSTFETIKEPEKSALKDSSFEVSKEPEKGVLKESTFERPKSEP EKSVLKKSTAQAEEAEVSGILKKTDDESSDIIASNITSNRVEEIKAEKPEKEKSPERQAGDKKGAGACASAIRRRGRDDK QPERYLTQPAETEKPEKSPDTARKMKYGAVRHKTQPVTPEEKREAEGQPEKGSSLKDRLSMLKKSGEEDWKKRVSRQLEY DSAGSAGSSPEVKRREKKLDLPRPSSIADRLNLLENAQEGWRGRVEEKDAKKFTVAHKLAGQVEESPLVRKLKERTKRES ESEQSSSELTSPSTPTRESSKIPLPTTIISGPPVERPTSEPVKVVAKETEEDETPKGPVKVAIPSMDDEHLQSFFQTKEV SEVISEKVDVTIDDFNELFIIANEFLPATRKIRPKRKHTARSKNPLKTMSTTVEIKTEYEEVTTGVAEMELKRMKTASIA KDAGFAQAALAGLASKENFAKVELRKTNDTSTRKSPARLDPYKDLMLIHVKGRRRTQVRLVEPSSKSINSGDCYILVTPD KLINWVGEFSNVIEKAKAADVASFINQKRDMGCKASIVETVEEARHHLGTGKKFWAAIGGMGTIASAGPTEEDELYENHI VETNMVYRLQDNSLVPYKEYWGAVPKYEMLNKNEVFVFDFGSELYVWQGKAVKPDQRKLGVKLARQLWEKGYDYTACDVN PVCPLLTEESGGLAAKGTERPSWALFGKVNQNMETILFREKFSDWPDTSRLIKVKSTEDVSGSKTDLADLKAYDASLMIP VNTKPVSLVLEGSNVGRGKEWYVQCI |
|