Gene
| Gene Model ID | pfu_aug1.0_16.1_07309 |
|---|---|
| Locus | scaffold16.1 : 505565 ... 516536 : + |
| To GenomeBrowser | scaffold16.1:505565..516536 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16.1_07309.t1 | 4 | 1 | Ldl_recept_a | 49 | 84 | 8.0e-28 | 96.0 | 1.9e-11 | 1.4e-07 | 31.2 |
| pfu_aug1.0_16.1_07309.t1 | 4 | 2 | Ldl_recept_a | 87 | 123 | 8.0e-28 | 96.0 | 8.0e-14 | 5.9e-10 | 38.8 |
| pfu_aug1.0_16.1_07309.t1 | 4 | 3 | Ldl_recept_a | 165 | 183 | 8.0e-28 | 96.0 | 0.0035 | 26.0 | 4.8 |
| pfu_aug1.0_16.1_07309.t1 | 4 | 4 | Ldl_recept_a | 187 | 224 | 8.0e-28 | 96.0 | 4.9e-14 | 3.6e-10 | 39.5 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 1 | Ldl_recept_b | 309 | 322 | 1.7e-17 | 63.4 | 0.0022 | 16.0 | 5.8 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 2 | Ldl_recept_b | 355 | 392 | 1.7e-17 | 63.4 | 1.1e-06 | 0.0081 | 16.4 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 3 | Ldl_recept_b | 395 | 440 | 1.7e-17 | 63.4 | 1.2e-06 | 0.0089 | 16.3 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 4 | Ldl_recept_b | 445 | 476 | 1.7e-17 | 63.4 | 0.00013 | 0.93 | 9.8 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 5 | Ldl_recept_b | 488 | 493 | 1.7e-17 | 63.4 | 0.14 | 1000.0 | 0.1 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 6 | Ldl_recept_b | 593 | 632 | 1.7e-17 | 63.4 | 0.00017 | 1.3 | 9.4 |
| pfu_aug1.0_16.1_07309.t1 | 7 | 7 | Ldl_recept_b | 636 | 675 | 1.7e-17 | 63.4 | 0.0032 | 24.0 | 5.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16.1_07309.t1 | gi|291240342|ref|XP_002740078.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_16.1_07309.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16.1_07309.t1 atgacatccattccccccttgttattaatatcacaaatacgttacaaaggagctgttaagataagggccagatttagccc tgaaatcactcgattatttctcgtgcgttgtccttcgaatttagataaaagatgtggcattccatgtgaagcatcacaat ttcagtgtgataattgccgctgtatatcacagtcagatctctgtaattatgtaaatgactgcggcgataattcagacgag catgaaaactgcacctatcctgcatgtgaaggtacagaatttagatgtgacaactggagatgtatacctcaagaccaagt atgtgatggcaaagactcctgtggtgacaaatctgacgaagctggctgtggtaagtgtagaggtcaaaggttacagatct caaggtcattgacaactggagatttatacctcaagaccaagtatgtgacggcaaagactcatgtggtgacaaatctgacg aagctggctgtggaccaagaatgtgaaggcaaagactcatgtggtgaaaaatctgatgatgctggctgtgatttggtaca atgtcgacctgacgaatggaaatgtccagaatctgggtcgtgtataccacaatcacagctgtgcgatgggaaaccagact gcacaaacctggaagatgaacctaagaattgtaattttgatgaatgtaaggcttggggttactgtgaccagaaatgcacc aatcagaatggattttacaaatgttcttgttatgacggatacttactacaggaccaaaggacctgcaaatcggaaagcac ttctccattgaatttgtatgtggcaacagaggatatctttgtaaaattagacaagaacggaaaagcagtatggaacactt ctgtgacccacgtgcacgatttaggcgtggatatcggaagaaagaagctgtattggattgatcatgatacaaaacagatg tacagttcgccattagcctctccgaccacgggacaattactgaacatgtacaacctatatcagccaacctccctgtcagt ggactggattactggtaacatttacatgactgatcgcagggcaaaggtcatcgatgtgtactcaaccatgaccaagttac agcggaatattattagtaacaatcttcaggaccctcgagctgtagctgtcgaccctctctctgggtatctgtttttctct gattacggacggaagcctcgacacgatgccaggatagagagaacgtacatggacgggagccagagaatggtgctggtaaa agatggcctcttagctccgtctagtattgtactcgatatcataaatcatgacattttctggacagacaacagactggatt acctacagagagtggattattatggaaaattcaggtccaccataatttccaatggtctgaaaattccaaatccactacgg atcaccatgtttgaggatatgttgtactgggcagacagcacaaagatgggtgtgcttcgacttccgaaatatggagatga accggcaactcaaatctaccgtaacgtcaaaagtaaaactcgggctgtcgtagcggtgcatccttccttacagccgttac ataagaaaaaagaaattaaccaatacctgttatttgctgccaagtacactgtccgagcgatctctctgactccaccagaa aaatatgccgtggatgcaattccgcaagtctatgccaagaaaacaggccgacgtggagtgaattacgtagctgtggatta cgatgcacataataagaaggtttacttctctgatattaggaatcatgccattatgcaggctgaattaggctcaaataatc caactccattgatagtaaacaatatcaaatctgttgagggtttgagcgttgattggattgccaagaacctatactacact gatttttaccatggttctctgtcagtgctacgtttgaaccagcccaacgagacacgcgtcttgatttctggcacagggaa acctagatcagtggttgtacatccattgaaagggtaa |
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Protein
| Protein ID | pfu_aug1.0_16.1_07309.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16.1_07309.t1 MTSIPPLLLISQIRYKGAVKIRARFSPEITRLFLVRCPSNLDKRCGIPCEASQFQCDNCRCISQSDLCNYVNDCGDNSDE HENCTYPACEGTEFRCDNWRCIPQDQVCDGKDSCGDKSDEAGCGKCRGQRLQISRSLTTGDLYLKTKYVTAKTHVVTNLT KLAVDQECEGKDSCGEKSDDAGCDLVQCRPDEWKCPESGSCIPQSQLCDGKPDCTNLEDEPKNCNFDECKAWGYCDQKCT NQNGFYKCSCYDGYLLQDQRTCKSESTSPLNLYVATEDIFVKLDKNGKAVWNTSVTHVHDLGVDIGRKKLYWIDHDTKQM YSSPLASPTTGQLLNMYNLYQPTSLSVDWITGNIYMTDRRAKVIDVYSTMTKLQRNIISNNLQDPRAVAVDPLSGYLFFS DYGRKPRHDARIERTYMDGSQRMVLVKDGLLAPSSIVLDIINHDIFWTDNRLDYLQRVDYYGKFRSTIISNGLKIPNPLR ITMFEDMLYWADSTKMGVLRLPKYGDEPATQIYRNVKSKTRAVVAVHPSLQPLHKKKEINQYLLFAAKYTVRAISLTPPE KYAVDAIPQVYAKKTGRRGVNYVAVDYDAHNKKVYFSDIRNHAIMQAELGSNNPTPLIVNNIKSVEGLSVDWIAKNLYYT DFYHGSLSVLRLNQPNETRVLISGTGKPRSVVVHPLKG |
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