Gene
| Gene Model ID | pfu_aug1.0_16.1_07313 |
|---|---|
| Locus | scaffold16.1 : 626135 ... 634140 : + |
| To GenomeBrowser | scaffold16.1:626135..634140 |
| Genes list of scaffold | scaffold16.1 |
| Synonym | pfu_aug2.0_1209.1_31521 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16.1_07313.t1 | 1 | 1 | Ependymin | 88 | 218 | 2.0e-22 | 79.3 | 1.9e-26 | 2.7e-22 | 78.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16.1_07313.t1 | gi|50539892|ref|NP_001002416.1| | mammalian ependymin-related protein 1 precursor [Danio rerio] | 4.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16.1_07313.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16.1_07313.t1 atgacttatacgcgcgcaacgttttatgcacgcatccacccatgtgtacgactcgttgacattgtaacatcgaccaaaat gacgaggatagcgttcgtgcttttagccattttcgcttggaccaacgcccaggccccttccccgtgcgttgcgcccacac aatttgcggcgcgggtatcacagtataatcatggaaccgacaccatcaaccgtttcatcatgcagtatgacgctagcaat gaacgttgggtgctctttgaagaaatggatgcatttacaccaggacgcagattctacgagtatcttatcctgacaagaga aaatgtagaatacaaattcgacctacgttcccacgagtgcaccaaagctcccgcccgaccctggagagcattcggaatcc ctctaaatggtacatttgagaacgagtttacacttggaggcccaggggagatgtttgttgctcaacaatggtcggacaga ataccctttagaacaaacgctcagattctcgtcgacgtcacattaatcaattgtttccccttaaaagaagtgctgatttc aaacaataatgtgacccagacaaccaccacagatttttacgacgttttggagggaaaccccaaccccaatgactttgtcc ctcccaaggaatgtttgacagccaagcaagtacaggacaaaccattcacacactggccgtag |
|
Protein
| Protein ID | pfu_aug1.0_16.1_07313.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16.1_07313.t1 MTYTRATFYARIHPCVRLVDIVTSTKMTRIAFVLLAIFAWTNAQAPSPCVAPTQFAARVSQYNHGTDTINRFIMQYDASN ERWVLFEEMDAFTPGRRFYEYLILTRENVEYKFDLRSHECTKAPARPWRAFGIPLNGTFENEFTLGGPGEMFVAQQWSDR IPFRTNAQILVDVTLINCFPLKEVLISNNNVTQTTTTDFYDVLEGNPNPNDFVPPKECLTAKQVQDKPFTHWP |
|