Gene
| Gene Model ID | pfu_aug1.0_1614.1_22680 |
|---|---|
| Locus | scaffold1614.1 : 21041 ... 28235 : - |
| To GenomeBrowser | scaffold1614.1:21041..28235 |
| Genes list of scaffold | scaffold1614.1 |
| Synonym | pfu_aug2.0_170.1_00363 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1614.1_22680.t1 | 2 | 1 | Methyltransf_31 | 96 | 138 | 1.1e-10 | 41.3 | 3.0e-08 | 6.3e-05 | 22.6 |
| pfu_aug1.0_1614.1_22680.t1 | 1 | 1 | Methyltransf_23 | 96 | 250 | 4.4e-10 | 39.4 | 3.2e-13 | 6.8e-10 | 38.8 |
| pfu_aug1.0_1614.1_22680.t1 | 1 | 1 | Methyltransf_18 | 100 | 227 | 3.7e-15 | 56.4 | 3.9e-18 | 8.3e-15 | 55.3 |
| pfu_aug1.0_1614.1_22680.t1 | 1 | 1 | Methyltransf_25 | 101 | 204 | 7.0e-09 | 35.9 | 7.6e-12 | 1.6e-08 | 34.8 |
| pfu_aug1.0_1614.1_22680.t1 | 1 | 1 | Methyltransf_11 | 102 | 224 | 1.4e-11 | 44.7 | 4.6e-13 | 9.7e-10 | 38.8 |
| pfu_aug1.0_1614.1_22680.t1 | 2 | 1 | Methyltransf_12 | 102 | 142 | 1.8e-10 | 41.1 | 7.2e-08 | 0.00015 | 22.1 |
| pfu_aug1.0_1614.1_22680.t1 | 2 | 2 | Methyltransf_12 | 160 | 222 | 1.8e-10 | 41.1 | 3.5e-06 | 0.0073 | 16.7 |
| pfu_aug1.0_1614.1_22680.t1 | 2 | 2 | Methyltransf_31 | 170 | 233 | 1.1e-10 | 41.3 | 2.4e-06 | 0.005 | 16.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1614.1_22680.t1 | gi|260803978|ref|XP_002596866.1| | hypothetical protein BRAFLDRAFT_99768 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1614.1_22680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1614.1_22680.t1 atgccatacgttatgggaatagatcataggtttattgtcatcggcgcattttcagtgtcgacaggtgttgccattttttc aacctacaaatggctgagtgaaaaggcaaagagaaagagggacaatgtatatgaatctgaaaaattattgaatgagtact tggtattccactatggcgctaaagatgaaattttaaagtatgattttggaccagtcaaggccttagattttcctaaaaga tgtgctgatctttgtcttaaacattgtggaggatttggaaagtcagacagcctgaacagagccttagacattggatgtgc agttggcagatcttcatttgaacttagaagagaattccaggaagtgattgggatagattacagtcagtcttttgttgatg cctgcactcagatgagagatttaggagaaatggtgtacttcatccaggatgaaggagacttagttacaccactgttggct aaagttgatcaagctattgatagaaatccagaaaagctgaagtttgagcaaggtgatgcctgtgacctacgtcatgacct aggtagttttggatgtgtcctagctgcaaacttaatttgccgtttacatgagccctttcactttctaaaccgtttaacag ggcttgtagcacctggtggaattctggttattacctccccctatacatggcttcaggagttcacagacaagagtaaatgg ctgggaggttatacagataataatggagagaaagttacaggattctctaccctgaagaaggagctgggccccaggtttga ccttgtggaagcagtggacatgcccttctttatacgagagacggcaaggaaaaaccagtggactgtggcacatgccactg tatggaaaagaaaactataa |
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Protein
| Protein ID | pfu_aug1.0_1614.1_22680.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1614.1_22680.t1 MPYVMGIDHRFIVIGAFSVSTGVAIFSTYKWLSEKAKRKRDNVYESEKLLNEYLVFHYGAKDEILKYDFGPVKALDFPKR CADLCLKHCGGFGKSDSLNRALDIGCAVGRSSFELRREFQEVIGIDYSQSFVDACTQMRDLGEMVYFIQDEGDLVTPLLA KVDQAIDRNPEKLKFEQGDACDLRHDLGSFGCVLAANLICRLHEPFHFLNRLTGLVAPGGILVITSPYTWLQEFTDKSKW LGGYTDNNGEKVTGFSTLKKELGPRFDLVEAVDMPFFIRETARKNQWTVAHATVWKRKL |
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