Gene
| Gene Model ID | pfu_aug1.0_1614.1_22682 |
|---|---|
| Locus | scaffold1614.1 : 43364 ... 50565 : - |
| To GenomeBrowser | scaffold1614.1:43364..50565 |
| Genes list of scaffold | scaffold1614.1 |
| Synonym | pfu_aug2.0_170.1_00365 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-estrogen receptor |
| Description | BLASTN best hit to accession AB259818 (Crassostrea gigas ER) 437 bits, e-121. Only putative ligand binding domain. DNA binding domain missing. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1614.1_22682.t1 | 1 | 1 | Hormone_recep | 58 | 240 | 1.1e-27 | 96.4 | 2.0e-31 | 1.4e-27 | 96.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1614.1_22682.t1 | gi|124001517|dbj|BAF45381.1| | estrogen receptor [Crassostrea gigas] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_1614.1_22682.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1614.1_22682.t1 atgtccaccaagcagcagacgacagccaagaggagtcgcgcggactcgtcagacaatactgtcaattctactagtggaag tcccaatcctccgaagaatgctcgccgatctcagactacggttattttggcggcactaaacaaggcagaacttcccatgt tggaggggttccacaatcataatcttccccccacaaaacttcacctccttaattccctcatcaaactagcagagagggaa ttagtgcacctcatcaactgggcaaaaaatgttccaggttacacagatctgtcgctgggagaccaggtccatctgatcga gtgttgttggatggaattgctcctcttaaaccgtgcattccggtccagagaacaagacggcaatcgtctggtatttgctc cggatcttatactggacaggtcaatgtgggcagttgtggggatgacagagatctttgaacaggttgcagcagtatctgaa caaatggtgcatcttaacgtacataaagacgagttcttactgctgcaagcaacggtcctcgttaatgcagaggctcgccg attggagagttatgtacagattcatcacatgcgacagtctttattggacgctattgtagatactgcacaaaaatatcatc cagacaatctcagacatgtgccgtcccttcttctattattaactcatatacgacaagcaggagagcgtgccatcgcttac tttcaaaaactcaaatatgagggtgctgtgaacttctgtgaccttttaaaggagatgctagatgcacaagattttatgga gagagtttccggaaatcaggtgcgacgtaatgaagactgtgacagtggccgtgtatcacagcctgggctcggcacgtaa |
|
Protein
| Protein ID | pfu_aug1.0_1614.1_22682.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1614.1_22682.t1 MSTKQQTTAKRSRADSSDNTVNSTSGSPNPPKNARRSQTTVILAALNKAELPMLEGFHNHNLPPTKLHLLNSLIKLAERE LVHLINWAKNVPGYTDLSLGDQVHLIECCWMELLLLNRAFRSREQDGNRLVFAPDLILDRSMWAVVGMTEIFEQVAAVSE QMVHLNVHKDEFLLLQATVLVNAEARRLESYVQIHHMRQSLLDAIVDTAQKYHPDNLRHVPSLLLLLTHIRQAGERAIAY FQKLKYEGAVNFCDLLKEMLDAQDFMERVSGNQVRRNEDCDSGRVSQPGLGT |
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