Gene
| Gene Model ID | pfu_aug1.0_16176.1_10901 |
|---|---|
| Locus | scaffold16176.1 : 2729 ... 24351 : - |
| To GenomeBrowser | scaffold16176.1:2729..24351 |
| Genes list of scaffold | scaffold16176.1 |
| Synonym | pfu_aug2.0_39.1_30061 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | chitin synthase like protein |
| Description | Chitin synthase, best hit to BLAST AAY86556.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16176.1_10901.t1 | 3 | 1 | Myosin_head | 2 | 302 | 0.0 | 299.6 | 0.0 | 0.0 | 210.8 |
| pfu_aug1.0_16176.1_10901.t1 | 3 | 2 | Myosin_head | 304 | 481 | 0.0 | 299.6 | 3.1e-29 | 1.2e-25 | 89.7 |
| pfu_aug1.0_16176.1_10901.t1 | 3 | 3 | Myosin_head | 688 | 767 | 0.0 | 299.6 | 0.26 | 950.0 | -2.6 |
| pfu_aug1.0_16176.1_10901.t1 | 1 | 1 | Glyco_tranf_2_3 | 825 | 931 | 9.7e-08 | 32.0 | 5.4e-11 | 2.0e-07 | 31.0 |
| pfu_aug1.0_16176.1_10901.t1 | 2 | 1 | Chitin_synth_2 | 827 | 990 | 2.4e-22 | 79.0 | 1.6e-24 | 5.8e-21 | 74.4 |
| pfu_aug1.0_16176.1_10901.t1 | 1 | 1 | Glyco_trans_2_3 | 827 | 981 | 1.4e-09 | 37.9 | 1.2e-12 | 4.6e-09 | 36.2 |
| pfu_aug1.0_16176.1_10901.t1 | 2 | 2 | Chitin_synth_2 | 1032 | 1133 | 2.4e-22 | 79.0 | 0.0013 | 4.7 | 5.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16176.1_10901.t1 | gi|68159936|gb|AAY86556.1| | chitin synthase [Atrina rigida] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_16176.1_10901.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16176.1_10901.t1 ataaacccgctggtggaattatttggcaatgcagtaacaacactgaatgcaaattcaagcagatttggtaaactcataga actgttctattcatctgacaggaaacttttgggaggtcgacttgagacttttgtcttagagaaatctcgtgttgttacac atggatataatgagaaaaatttccacatattttacgctctgtttgcgggaatggacgaacaggagctccgtcaatattac atgttggagaatcctagtgcctacaggtgaattcttcagccaagcctcacttcagacattcattctccaactaagtcgag aaattaccatgaaagatcagcattcaaagatgctgacgagagactgaagtacaaacagcagtatcaaaaaggaggacaaa ttctcagatatttggaatatactaatgaggaaatccatgcccttcgggaaattttgtctgccattcttcaccttggaaac attgagttttgtacaaatgacgtcactgatgatgttgatgtcgttgatgaaagtcacttactgaatgagaaagtacatcg tcgaaaaacaatttatcaggccgaggaagagagggacgctcttgcgaaggagctgtacagtgtattgttttcgaccataa ttatccgtgtcaccgacagcataaaaccagcttctagaacagattcatccattggtttgctggacataagcggattcgaa aatttcgcagacacttcaaagaacagatttgagcagctactcataaacatcacatatgaaagactgcaccagtactttca gaagcaaattttcaaggtagaggaagaggattacttgagggaagggctgaacttccagaatgtgcaatacttgtacaaag gaaacaaggatgtactcgatctgatattcgacgttgtatacaatgccgatggtttcctggaaaagaacaaaggaaaagtt tcagcaatattgttagactgtttgagaaaaagtccaaacccaattctctgccacagtgaagatttggcaaactctgtgcg aagtgttcgagcgatttcttcaaaatcaagatctatacataacagtgttgttaaacagtacaagaaatctcttaatagct tgaatgacattctaacaaaagccaaaccgttattcatcaggtgtattaaaccaaacaaacacttacaagaaggagtgttc gatatcccctatgccagtagccagcttctgagtactggaattctagaagtgtcaaaaattcgacgagatggtttccctgt ccgactaaaatttgaacattttgtcaataggtacagaaattacctcagagaatttggaataatgccatcatatgcgatca acaactgcaaagacgtattgggccttacaacacttagggaagaccaagatttcatgtttggaaaatctaaggttttcatg aaatgcaatggcttggattccgtcgattctactgtatacatgaagattcgagaaatgcaacagaaaagagaagaagaacg aaaagcacgggagcgcaaactagaggagaagaaacagcggcgtctctctacaacaagcaatatatcccgaaggtcaacaa gcagtaagatatctttggatgtaagaactgacacggagggagacacatcgggaggctttcggaccccgagaaggaaatct agcagtgacaaacacgacataacatctgaatcctccatgtcaagacctcctccatatgaatctgttgtagatgaagtaaa attgccacgtttacacttaaccatcgtcagtgatcctcaatctaaacaatgttctatgaccaaagattgtgaaaatcatt atgttcaaaagtgtaccgaaaaatacgaagataaagacagagttggtganacggattataatggcgacaccatcgcttgt tttcgttcacattacaacatcgtggatccgactccagttccaactgtcattgaatcagcattatcagagaactgttcaac agacatagcagcgtcattagcatcttactttctgaacaaaatgtcatcagaaactttcaacataacttcatttcctctta atgaatccgagtcatcggataactatacaatagatatatccacaatattagtatcttacttcctgaacaaaatgtcagaa actttcaatattacttcatttcccgttaatgtatcagtgatatcggaacactctacaacaaatatagccacgacattagc atctagttttctgaacacagtttcgtcgaaaatgctcaacatgagttcaactcaagtaaatatgtcagcattatcagata tctatacagcagacatagctcggatattagcatcttactttttaaacaaagtttcatcacaaacgttcaacacatgtatc agaaatatcgacaacaacagcgccgacatcagcatcttacttttcgaacaatatgaaatcggaccgatgatatggtatca gcgatttgaatactctgtcggacactggttacagaaagctgccgagcatgtctttgggtgtatcctgtgctgcccgggat gcttcagtctattccgaggctctgcattaatggatgataatgtgatgaaaatgtacacaactcctccttcagaagctaaa cattacatacagtttgagcaaggtgaagaccgatggttgtgcacacttctgttacagcaagggtggaaaatagagtattg cgcaggagctgatgccttcactttctcaccagaaacgttcaaggatttctttgttcagcgcaggcgctgggcaccttcaa cgttagccaacatcattgatcttgtgtcttcctggtccattactgttaaaacaaacgacaatatcagttctttattcatg ttctaccagtttatattgttatcgtctagtcttctaggacctgcacttgttacacttatgatagctggttcttatacggc agtattccgtattcacgagtggtatggtcttctgttagcaattgcaccggtcgtcgtgtatatagggatatgtctaaaag ccagaaatgaaacccagatcctggtggcagggctgctgtcttctctgtattcagttgtcatggtaatcgttactgtggga acgctccttaatgctttgtcggagcccatttacagtccaattgttattcttcccatcagtttggcttttgtgtttcttac agcaggattgatgcatccaaaggaaatcctgaacttagtatttggcattctgtactatttaacagtcccatcgacatttg ttttcttgacagtgtattacctttgtaatctgcatatcgtttcttggggcactagagaggggtcttcatcaaataatcag accgacgatcatctggacatgaaaaagaagactcaaaagacagctgaacaagagaaaatagaaggcgttagtgcttggtc atcatctggttttctgggagataaaattccaaaagagactgatatccaagagagtgcgttttggaagtatatcattccta aatatcttacacccatggctcacaatgaaaaagacaaggaaaagatcagagtggaattagtatctttgagaaacaatgtt gtctttggatttttccttctgaatttgttatttacgattctggtatttcagttgcagataaacaaggaatccttaagaaa cttcttctttttaggggaatacgagccagtgtcacttgtattcttgttcgtatttgccgttatagttctgatccagtact tcggaatggtgatgcaccgctggggaacctatcagcacctcattgcaagtatgaatttaggaatatgcggtaaacacgcg agtgatgagagttactctcaactggccttaaaggaagtagggaagcttcaaagtgcaaactctgacattgttcgagatga cgacaacgctaatgccagtatgacaagcgacacaacctttgaccctaattatcctcccgaggattactctacagacgagg ataccccggactatgacacggacagtccggactactcagatgaccaattggatacggtgcaagaaaatgcttacttcaga aacttccaacaacggttcaacacgagaaggttgatgttctcgcatgatcaaaatcgtcggacaggaagacccttacactt ggacgtcagtcgtagatcaacacaagatttgtactacagaactatcagagatagaggcattatgaattcatacggtagac ataaccaaaatatgtatggagtgcatcatgtatga |
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Protein
| Protein ID | pfu_aug1.0_16176.1_10901.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16176.1_10901.t1 INPLVELFGNAVTTLNANSSRFGKLIELFYSSDRKLLGGRLETFVLEKSRVVTHGYNEKNFHIFYALFAGMDEQELRQYY MLENPSAYRXILQPSLTSDIHSPTKSRNYHERSAFKDADERLKYKQQYQKGGQILRYLEYTNEEIHALREILSAILHLGN IEFCTNDVTDDVDVVDESHLLNEKVHRRKTIYQAEEERDALAKELYSVLFSTIIIRVTDSIKPASRTDSSIGLLDISGFE NFADTSKNRFEQLLINITYERLHQYFQKQIFKVEEEDYLREGLNFQNVQYLYKGNKDVLDLIFDVVYNADGFLEKNKGKV SAILLDCLRKSPNPILCHSEDLANSVRSVRAISSKSRSIHNSVVKQYKKSLNSLNDILTKAKPLFIRCIKPNKHLQEGVF DIPYASSQLLSTGILEVSKIRRDGFPVRLKFEHFVNRYRNYLREFGIMPSYAINNCKDVLGLTTLREDQDFMFGKSKVFM KCNGLDSVDSTVYMKIREMQQKREEERKARERKLEEKKQRRLSTTSNISRRSTSSKISLDVRTDTEGDTSGGFRTPRRKS SSDKHDITSESSMSRPPPYESVVDEVKLPRLHLTIVSDPQSKQCSMTKDCENHYVQKCTEKYEDKDRVGXTDYNGDTIAC FRSHYNIVDPTPVPTVIESALSENCSTDIAASLASYFLNKMSSETFNITSFPLNESESSDNYTIDISTILVSYFLNKMSE TFNITSFPVNVSVISEHSTTNIATTLASSFLNTVSSKMLNMSSTQVNMSALSDIYTADIARILASYFLNKVSSQTFNTCI RNIDNNSADISILLFEQYEIGPMIWYQRFEYSVGHWLQKAAEHVFGCILCCPGCFSLFRGSALMDDNVMKMYTTPPSEAK HYIQFEQGEDRWLCTLLLQQGWKIEYCAGADAFTFSPETFKDFFVQRRRWAPSTLANIIDLVSSWSITVKTNDNISSLFM FYQFILLSSSLLGPALVTLMIAGSYTAVFRIHEWYGLLLAIAPVVVYIGICLKARNETQILVAGLLSSLYSVVMVIVTVG TLLNALSEPIYSPIVILPISLAFVFLTAGLMHPKEILNLVFGILYYLTVPSTFVFLTVYYLCNLHIVSWGTREGSSSNNQ TDDHLDMKKKTQKTAEQEKIEGVSAWSSSGFLGDKIPKETDIQESAFWKYIIPKYLTPMAHNEKDKEKIRVELVSLRNNV VFGFFLLNLLFTILVFQLQINKESLRNFFFLGEYEPVSLVFLFVFAVIVLIQYFGMVMHRWGTYQHLIASMNLGICGKHA SDESYSQLALKEVGKLQSANSDIVRDDDNANASMTSDTTFDPNYPPEDYSTDEDTPDYDTDSPDYSDDQLDTVQENAYFR NFQQRFNTRRLMFSHDQNRRTGRPLHLDVSRRSTQDLYYRTIRDRGIMNSYGRHNQNMYGVHHV |
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