Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_16182.1_46948
Locus scaffold16182.1 : 3152 ... 7245 : -
To GenomeBrowser scaffold16182.1:3152..7245
Genes list of scaffold scaffold16182.1
Synonym pfu_aug2.0_1327.1_24861

Manual annotation
Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_16182.1_46948.t1 gi|57164664|gb|AAW34268.1| 6.0e-20

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
Dshape 1

Transcript
Transcript IDpfu_aug1.0_16182.1_46948.t1
Definition-
>pfu_aug1.0_16182.1_46948.t1
atgacatcagctggcatgggtatcacatcacagatggtcaacaattctatggcatccccaccggacatcaaacctgacat
caactccatctctgtcaactctccattcttctcatacagcccaggtgtcatgcccatgtcatcacagccctcccccggca
cacagcccatgcactcgccaggcctacactcaccttcatcatcagtcacatccccatcaatggcttccttaggctcaccc
gggtctgcagcgtcacctccaaacacacacatggcacacactactctgaatgtaaaacacatatgtgctatctgtggaga
ccgagcatcaggaaaacattatggtgtctataggtag

Protein
Protein IDpfu_aug1.0_16182.1_46948.t1
Definition-
>pfu_aug1.0_16182.1_46948.t1
MTSAGMGITSQMVNNSMASPPDIKPDINSISVNSPFFSYSPGVMPMSSQPSPGTQPMHSPGLHSPSSSVTSPSMASLGSP
GSAASPPNTHMAHTTLNVKHICAICGDRASGKHYGVYR

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