Gene
| Gene Model ID | pfu_aug1.0_1624.1_29786 |
|---|---|
| Locus | scaffold1624.1 : 17256 ... 45334 : + |
| To GenomeBrowser | scaffold1624.1:17256..45334 |
| Genes list of scaffold | scaffold1624.1 |
| Synonym | pfu_aug2.0_689.1_31061 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1624.1_29786.t2 | 2 | 1 | SNF2_N | 1 | 16 | 3.1e-33 | 114.8 | 0.00048 | 1.0 | 8.1 |
| pfu_aug1.0_1624.1_29786.t2 | 2 | 2 | SNF2_N | 95 | 224 | 3.1e-33 | 114.8 | 1.8e-33 | 3.9e-30 | 104.6 |
| pfu_aug1.0_1624.1_29786.t2 | 1 | 1 | Helicase_C | 588 | 645 | 4.8e-06 | 26.3 | 4.1e-09 | 8.7e-06 | 25.5 |
Transcript
| Transcript ID | pfu_aug1.0_1624.1_29786.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1624.1_29786.t1 atggggctcggtaaaacggtagagatgctggcatgtataatggctcatcgtcgtgaaggtgtggaacagccaagtccttt acctgtgctggatcagatggcacttgaagaagacattgatcgatttgaatgtacatgtggttctaagaataagaagacta tcagggttagaaggcggaagaaaaaacttaacaaagtccgctgtgtgaaatgtggtctgtggcagcatgcagaatgtgtg aactatgacctcagtgacccttatagaggagagttcaaatgtcctcactgtcacatggcagagatttgtctggatgaagc tcaaatggtagaaagtactactgctaaggctgctgaaatggccctaaaactaacaacagtaaatagatggtgtgctacgg gtacccccattcaaaaagggattgaagatctgtatggtttactactgtttttgggaattgatccttattggcagaaatgt tggtttgacaagcttctttataaaccgttgtgctacggcgtacaaaccccaatgagtaatgttatctcccaggttctgtg gagaacggtgaaaaaagatgtcattgatcaggtcttgcggagaaccgttaaaaaggatattaattatcagtattcagaag ctgtagaaatgtacagggaggtgttaaggtctatagaggaacacaaggccagactacgtactgatgatctacagctgtta cacgccctgtataatctgaatgagattgaagatttgaagaaaaagtacattctgaaatccaagagtgtggtagtacacgt ccaggaacaattaactcccatcagggcagatattttgaaatatcaaaaagagttaaggagaggacagagttggtgggtag agatcatggaacattgtgtggagagagacctggatgatgatcttatactacatgtcaaagaggaaatagataaagagaaa ggaagcaagaccatgtccatatccagatcattccgtaacgtcaggggattagagtttatactgaacgacaaattagttgc catggagacagcctacgaggcagtaaaagagagcatggtgagactgagtaaggacccgtcacaggatctgattaacgagg caacagactgctgtcttagacctataggcaaaatcaaagccacatgtcctttttgtaagacctcgggtctctttgaagag tatgaatccaagttattctcatttactgaccatttcataaaatctatatttcagcctttccgtaatttgtggattgaact gaaggcacatgtagcatcatttgacgagatcagcatggcaaccaccagattgaggctgagactacctgacgaaccaaaac cagacaacacccaaatgaacatcatagaaccatgtgagtggagtgtgctacagtgtggccattgttactgcctagagtgt atccgtactctatgtgagttgtacagcttcggaggtcgtaatcgtcaggtcacgtgtgcactctgcagggataaaacttt ccattctgatatatcgtacgtcagcaccatcagaaaaacggaagtcaatgaacagagtgtcaagggaagccattccagta agatacaaggagttgtgaaatgtctgaagcaaatacaacaagatgatcctggtgccaaggctctagtcttctccacttgg acagatgtattgagcgtgatatctcaggctctggaagaaaatggtatatctcacaaaactttacagagtggagcaagatt tcagaaaaatctatcagccttcaaggacaatgagaaaataaccaccctgttactccccattcattccggagctaatggtc ttaacattatagaggctacgtacgtcctgctggtagaacccgtccttaatcctgctcaggaactacaggccatcggcaga atccatcgtataggacaaactaagtatgtcctcaatgtgaatgatgtacgagacaattcggagatctattatataataaa tcaattaccaatttatatttatgcgcataattatgcaaatgagctggcgacaatacccaggcaaaaccagaacgaatgga ctatttttcaggacataataaacgtcatttacggaccttacccgattttaggggatgatgtattactgagggatggacaa gtgagacattcggatgtactccgaaattaa |
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| Transcript ID | pfu_aug1.0_1624.1_29786.t2 |
| Definition | - |
>pfu_aug1.0_1624.1_29786.t2 atggggctcggtaaaacggtagagatgctggcatgtataatggctcatcgtcgtgaaggtgtggaacagccaagtccttt acctgtgctggatcagatggcacttgaagaagacattgatcgatttgaatgtacatgtggttctaagaataagaagacta tcagggttagaaggcggaagaaaaaacttaacaaagtccgctgtgtgaaatgtggtctgtggcagcatgcagaatgtgtg aactatgacctcagtgacccttatagaggagagttcaaatgtcctcactgtcacatggcagagatttgtctggatgaagc tcaaatggtagaaagtactactgctaaggctgctgaaatggccctaaaactaacaacagtaaatagatggtgtgctacgg gtacccccattcaaaaagggattgaagatctgtatggtttactactgtttttgggaattgatccttattggcagaaatgt tggtttgacaagcttctttataaaccgttgtgctacggcgtacaaaccccaatgagtaatgttatctcccaggttctgtg gagaacggtgaaaaaagatgtcattgatcaggtcttgcggagaaccgttaaaaaggatattaattatcagtattcagaag ctgtagaaatgtacagggaggtgttaaggtctatagaggaacacaaggccagactacgtactgatgatctacagctgtta cacgccctgtataatctgaatgagattgaagatttgaagaaaaagtacattctgaaatccaagagtgtggtagtacacgt ccaggaacaattaactcccatcagggcagatattttgaaatatcaaaaagagttaaggagaggacagagttggtgggtag agatcatggaacattgtgtggagagagacctggatgatgatcttatactacatgtcaaagaggaaatagataaagagaaa ggaagcaagaccatgtccatatccagatcattccgtaacgtcaggggattagagtttatactgaacgacaaattagttgc catggagacagcctacgaggcagtaaaagagagcatggtgagactgagtaaggacccgtcacaggatctgattaacgagg caacagactgctgtcttagacctataggcaaaatcaaagccacatgtcctttttgtaagacctcgggtctctttgaagag tatgaatccaagttattctcatttactgaccatttcataaaatctatatttcagcctttccgtaatttgtggattgaact gaaggcacatgtagcatcatttgacgagatcagcatggcaaccaccagattgaggctgagactacctgacgaaccaaaac cagacaacacccaaatgaacatcatagaaccatgtgagtggagtgtgctacagtgtggccattgttactgcctagagtgt atccgtactctatgtgagttgtacagcttcggaggtcgtaatcgtcaggtcacgtgtgcactctgcagggataaaacttt ccattctgatatatcgtacgtcagcaccatcagaaaaacggaagtcaatgaacagagtgtcaagggaagccattccagta agatacaaggagttgtgaaatgtctgaagcaaatacaacaagatgatcctggtgccaaggctctagtcttctccacttgg acagatgtattgagcgtgatatctcaggctctggaagaaaatggtatatctcacaaaactttacagagtggagcaagatt tcagaaaaatctatcagccttcaaggacaatgagaaaataaccaccctgttactccccattcattccggagctaatggtc ttaacattatagaggctacgtacgtcctgctggtagaacccgtccttaatcctgctcaggaactacaggccatcggcaga atccatcgtataggacaaactaagtatgtcctcaatgtgaatgatgtacgagacaattcggagatctattatataataaa tcaattaccaatttatatttatgcgcataattatgcaaatgagctggcgacaatacccaggcaaaaccagaacgaatgga ctatttttcaggacataataaacgtcatttacggaccttacccgattttaggggatgatgtattactgagggatggacaa gtgagacattcggatgtactccgaaattaa |
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Protein
| Protein ID | pfu_aug1.0_1624.1_29786.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1624.1_29786.t1 MGLGKTVEMLACIMAHRREGVEQPSPLPVLDQMALEEDIDRFECTCGSKNKKTIRVRRRKKKLNKVRCVKCGLWQHAECV NYDLSDPYRGEFKCPHCHMAEICLDEAQMVESTTAKAAEMALKLTTVNRWCATGTPIQKGIEDLYGLLLFLGIDPYWQKC WFDKLLYKPLCYGVQTPMSNVISQVLWRTVKKDVIDQVLRRTVKKDINYQYSEAVEMYREVLRSIEEHKARLRTDDLQLL HALYNLNEIEDLKKKYILKSKSVVVHVQEQLTPIRADILKYQKELRRGQSWWVEIMEHCVERDLDDDLILHVKEEIDKEK GSKTMSISRSFRNVRGLEFILNDKLVAMETAYEAVKESMVRLSKDPSQDLINEATDCCLRPIGKIKATCPFCKTSGLFEE YESKLFSFTDHFIKSIFQPFRNLWIELKAHVASFDEISMATTRLRLRLPDEPKPDNTQMNIIEPCEWSVLQCGHCYCLEC IRTLCELYSFGGRNRQVTCALCRDKTFHSDISYVSTIRKTEVNEQSVKGSHSSKIQGVVKCLKQIQQDDPGAKALVFSTW TDVLSVISQALEENGISHKTLQSGARFQKNLSAFKDNEKITTLLLPIHSGANGLNIIEATYVLLVEPVLNPAQELQAIGR IHRIGQTKYVLNVNDVRDNSEIYYIINQLPIYIYAHNYANELATIPRQNQNEWTIFQDIINVIYGPYPILGDDVLLRDGQ VRHSDVLRN |
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| Protein ID | pfu_aug1.0_1624.1_29786.t2 |
| Definition | - |
>pfu_aug1.0_1624.1_29786.t2 MGLGKTVEMLACIMAHRREGVEQPSPLPVLDQMALEEDIDRFECTCGSKNKKTIRVRRRKKKLNKVRCVKCGLWQHAECV NYDLSDPYRGEFKCPHCHMAEICLDEAQMVESTTAKAAEMALKLTTVNRWCATGTPIQKGIEDLYGLLLFLGIDPYWQKC WFDKLLYKPLCYGVQTPMSNVISQVLWRTVKKDVIDQVLRRTVKKDINYQYSEAVEMYREVLRSIEEHKARLRTDDLQLL HALYNLNEIEDLKKKYILKSKSVVVHVQEQLTPIRADILKYQKELRRGQSWWVEIMEHCVERDLDDDLILHVKEEIDKEK GSKTMSISRSFRNVRGLEFILNDKLVAMETAYEAVKESMVRLSKDPSQDLINEATDCCLRPIGKIKATCPFCKTSGLFEE YESKLFSFTDHFIKSIFQPFRNLWIELKAHVASFDEISMATTRLRLRLPDEPKPDNTQMNIIEPCEWSVLQCGHCYCLEC IRTLCELYSFGGRNRQVTCALCRDKTFHSDISYVSTIRKTEVNEQSVKGSHSSKIQGVVKCLKQIQQDDPGAKALVFSTW TDVLSVISQALEENGISHKTLQSGARFQKNLSAFKDNEKITTLLLPIHSGANGLNIIEATYVLLVEPVLNPAQELQAIGR IHRIGQTKYVLNVNDVRDNSEIYYIINQLPIYIYAHNYANELATIPRQNQNEWTIFQDIINVIYGPYPILGDDVLLRDGQ VRHSDVLRN |
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