Gene
| Gene Model ID | pfu_aug1.0_16270.1_46959 |
|---|---|
| Locus | scaffold16270.1 : 6299 ... 19415 : - |
| To GenomeBrowser | scaffold16270.1:6299..19415 |
| Genes list of scaffold | scaffold16270.1 |
| Synonym | pfu_aug2.0_9804.1_16395 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16270.1_46959.t1 | 6 | 1 | WD40 | 108 | 134 | 2.7e-29 | 99.9 | 0.0017 | 6.4 | 6.8 |
| pfu_aug1.0_16270.1_46959.t1 | 6 | 2 | WD40 | 140 | 175 | 2.7e-29 | 99.9 | 6.6e-09 | 2.5e-05 | 23.9 |
| pfu_aug1.0_16270.1_46959.t1 | 6 | 3 | WD40 | 189 | 213 | 2.7e-29 | 99.9 | 7.6e-08 | 0.00028 | 20.6 |
| pfu_aug1.0_16270.1_46959.t1 | 6 | 4 | WD40 | 239 | 267 | 2.7e-29 | 99.9 | 1.6e-05 | 0.06 | 13.2 |
| pfu_aug1.0_16270.1_46959.t1 | 6 | 5 | WD40 | 279 | 308 | 2.7e-29 | 99.9 | 6.9e-06 | 0.026 | 14.4 |
| pfu_aug1.0_16270.1_46959.t1 | 6 | 6 | WD40 | 313 | 350 | 2.7e-29 | 99.9 | 3.2e-09 | 1.2e-05 | 25.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16270.1_46959.t1 | gi|260806123|ref|XP_002597934.1| | hypothetical protein BRAFLDRAFT_79824 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16270.1_46959.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16270.1_46959.t1 atgttcacatcgttactttgcttctttgcttcttctcaactttgcttcttctcaactttgtttcttctcaactttgcttc tttgcaacataaaatttccttcttcacaactttacaagttcgttcttcgtggtccatttttgcatgcgcacaattgatga acatgatggaaattatagccggtgtagtacaagacttggatctgtataatgaagaagatgatgatgataacttggatgat gacgacgaaatgttggaagcagcaggagctgatgttgaggataaggcagatttggtgtttagtggacataaagtggacat atttataaagtggctagagtggcaccagatggcccatgtgttactggtggggactgcagatggagagtgctggatgtgga aggtgccaagtggcaacaccaaaactttccaaggtcacgggtcaccagcaagctgtggtagactgttcaatgatggaaag aggcttgcagttggttatggtgatggtagtgtaaaaatatgggacttgaaatcagccactgcccttcattcactagatgg aaaaggtggccatacctcttctgtcgtctgcattgattgtcaccatgacaacaatctggtgctaacaggatccactgatg taacatcaagcatcataaatagcaattctggaaaggtaatgggtgcaatgaattgtgcagatagtgaaaatactgaaaat tcagttgaatcctgtgcattttcaaaattacagaactatgctgctactggaactttagcgggaaaattacacatatggga tgtaccaacacagacttgtaggaatacatgtcaacatcctgcaggtgtagtaaagttattgtgggatgccactcagccaa tagtttatacagcatgtctagatggcatcattcgcacgtgggactccagaaacggacagctgatctcatcgttagggggt catcaggattctatattggactttgatctaagcaaagatggtaaaatgttagtatcagtatcagaggatcaaacagccag agtctacaaactgtaa |
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Protein
| Protein ID | pfu_aug1.0_16270.1_46959.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16270.1_46959.t1 MFTSLLCFFASSQLCFFSTLFLLNFASLQHKISFFTTLQVRSSWSIFACAQLMNMMEIIAGVVQDLDLYNEEDDDDNLDD DDEMLEAAGADVEDKADLVFSGHKVDIFIKWLEWHQMAHVLLVGTADGECWMWKVPSGNTKTFQGHGSPASCGRLFNDGK RLAVGYGDGSVKIWDLKSATALHSLDGKGGHTSSVVCIDCHHDNNLVLTGSTDVTSSIINSNSGKVMGAMNCADSENTEN SVESCAFSKLQNYAATGTLAGKLHIWDVPTQTCRNTCQHPAGVVKLLWDATQPIVYTACLDGIIRTWDSRNGQLISSLGG HQDSILDFDLSKDGKMLVSVSEDQTARVYKL |
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