Gene
| Gene Model ID | pfu_aug1.0_1629.1_00772 |
|---|---|
| Locus | scaffold1629.1 : 16001 ... 23465 : - |
| To GenomeBrowser | scaffold1629.1:16001..23465 |
| Genes list of scaffold | scaffold1629.1 |
| Synonym | pfu_aug2.0_2431.1_05530 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-j |
| Description | Best hit to EAX04750 heart and neural crest derivatives expressed 2, isoform CRA_b [Homo sapiens] with 3e-10 by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1629.1_00772.t1 | 2 | 1 | HLH | 23 | 29 | 1.3e-12 | 47.1 | 0.27 | 1400.0 | -0.9 |
| pfu_aug1.0_1629.1_00772.t1 | 2 | 2 | HLH | 45 | 92 | 1.3e-12 | 47.1 | 2.7e-16 | 1.3e-12 | 47.1 |
Transcript
| Transcript ID | pfu_aug1.0_1629.1_00772.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1629.1_00772.t1 atgaatcgaagtttctcggtattctgcgatataaatcaaacgcatgacattacgtgcaatcccagaaataaaagaagacg acggaaacggaaacatgtaccacacgcaaaacgctctgtggaattcgtagaaaatcgtaacagacgtgaacgggagaggg tacgtgaattgaaggctgcgtttgagaacttaagaaagcatgtaccttactgtgaccaagatgatagagtgtctaaggtg gatattctgttagcagccacagattacatacatggcatgatggatatgatacacaaatatgaccacaatgctcctagtac tttaagaaacacgtacaatctgacatcaagcggtcaaatgcagggagatttgcagtggacaaaacagaaactagacaatg gtgaattatttccaacctgtgacaagacccatcttaaaacatttttcctcactggcatagccggagaggacccttaa |
|
Protein
| Protein ID | pfu_aug1.0_1629.1_00772.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1629.1_00772.t1 MNRSFSVFCDINQTHDITCNPRNKRRRRKRKHVPHAKRSVEFVENRNRRERERVRELKAAFENLRKHVPYCDQDDRVSKV DILLAATDYIHGMMDMIHKYDHNAPSTLRNTYNLTSSGQMQGDLQWTKQKLDNGELFPTCDKTHLKTFFLTGIAGEDP |
|