Gene
| Gene Model ID | pfu_aug1.0_16293.1_32676 |
|---|---|
| Locus | scaffold16293.1 : 10540 ... 21955 : - |
| To GenomeBrowser | scaffold16293.1:10540..21955 |
| Genes list of scaffold | scaffold16293.1 |
| Synonym | pfu_aug2.0_1670.1_01762 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16293.1_32676.t1 | 4 | 1 | Ig_3 | 9 | 81 | 1.5e-26 | 92.6 | 9.1e-11 | 2.7e-07 | 30.9 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 1 | I-set | 12 | 87 | 1.2e-19 | 69.9 | 8.6e-08 | 0.00025 | 20.8 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 1 | V-set | 16 | 76 | 1.7e-11 | 44.0 | 2.5e-07 | 0.00073 | 19.4 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 1 | Ig_2 | 21 | 81 | 2.1e-22 | 79.0 | 2.3e-10 | 6.9e-07 | 29.3 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 1 | ig | 24 | 78 | 5.7e-12 | 45.5 | 4.1e-06 | 0.012 | 15.6 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 2 | Ig_3 | 98 | 166 | 1.5e-26 | 92.6 | 5.9e-09 | 1.8e-05 | 25.1 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 2 | I-set | 103 | 169 | 1.2e-19 | 69.9 | 3.0e-08 | 8.8e-05 | 22.2 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 2 | Ig_2 | 104 | 172 | 2.1e-22 | 79.0 | 2.8e-09 | 8.2e-06 | 25.8 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 2 | ig | 112 | 166 | 5.7e-12 | 45.5 | 4.7e-05 | 0.14 | 12.2 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 2 | V-set | 129 | 169 | 1.7e-11 | 44.0 | 3.4e-06 | 0.01 | 15.7 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 3 | V-set | 177 | 265 | 1.7e-11 | 44.0 | 0.0049 | 14.0 | 5.5 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 3 | Ig_2 | 213 | 275 | 2.1e-22 | 79.0 | 5.6e-05 | 0.17 | 12.0 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 3 | Ig_3 | 218 | 264 | 1.5e-26 | 92.6 | 6.5e-09 | 1.9e-05 | 25.0 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 3 | ig | 231 | 261 | 5.7e-12 | 45.5 | 0.00064 | 1.9 | 8.6 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 3 | I-set | 241 | 266 | 1.2e-19 | 69.9 | 8.0e-05 | 0.24 | 11.2 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 4 | Ig_3 | 291 | 355 | 1.5e-26 | 92.6 | 4.6e-08 | 0.00014 | 22.3 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 4 | Ig_2 | 299 | 368 | 2.1e-22 | 79.0 | 7.3e-06 | 0.022 | 14.8 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 4 | ig | 305 | 353 | 5.7e-12 | 45.5 | 0.00012 | 0.35 | 11.0 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 4 | I-set | 308 | 365 | 1.2e-19 | 69.9 | 0.0002 | 0.6 | 10.0 |
| pfu_aug1.0_16293.1_32676.t1 | 4 | 4 | V-set | 345 | 356 | 1.7e-11 | 44.0 | 0.1 | 300.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16293.1_32676.t1 | gi|341902136|gb|EGT58071.1| | CBN-HIM-4 protein [Caenorhabditis brenneri] | 3.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16293.1_32676.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16293.1_32676.t1 atgtttttttttcacaaatcagagaaacccgtcgtttcgattgaccatcagatctttaacacggcagaagggcaaagtat aacactccagtgtaatctggaaagggcttctcctgagatcatactagaatggcgatggtacaagttaggacatgaagaaa atatattgtccaaaacaccttcatttaccattgattacatttcacctgcgcatgcaggaaattactcctgcatcgctcgg aatattatcggagaatctgacccggctgtgacaactttaaacatctttgtacctccagtgattgctgtcatggaaaacaa aacccctacagagggttcttcattgacattgctctgcaacattacttcaaatccagtaccctctaacaatcaagtgtttt ggacaaaagtagacgagatgtcgttcaaagtaattggacgtactctatcgtttcaaaacataaaccgtcaagataccggg atatactcttgcaatgtaaatgtttcaatggtgttaaattctggacaatggatatcaaaatcagccacggaaaatgtacg aattgacgtcttatatggtccaggtgattccatgaaaatttcgcccgattccgatgtaacgtattactatgaaaatggca ggacaaaccctgtggtatgtactgctgtctgtaaccctacatgcaggatatactggaaagatccctatggaaacacatta gatgggaatactttgagacttggcaatgcctcaagaagcatgaatggaacatacacctgtatagctgaaaatgttatcgc gtctttatcctattcatcaaatacatccattgtaattatagtctattatcccccaggaacatctatcagtttaacaggtt cttctcgtaccatcaatataatcgaaggaaatgacttagcggatattacctgcaatgcgcagtgtgttccagaatgcagc tataattggatatatcccaatggctcttccgtccccggtagagtacttagactcaacaaggcagctcgacacatgaatgg aacatatttttgctatgcgcaaaatgaaatagcatccgagaaacattcttcgcgtatcgacgtcgctgtcatcgttttct atgttgctgtaaatccttatagcgttggctatgtaaggtattatcctgataacagttcttcaagggatagtcacagtaca acatctggtgacggttccaatagtagttatttttccatcttaccaatgtga |
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Protein
| Protein ID | pfu_aug1.0_16293.1_32676.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16293.1_32676.t1 MFFFHKSEKPVVSIDHQIFNTAEGQSITLQCNLERASPEIILEWRWYKLGHEENILSKTPSFTIDYISPAHAGNYSCIAR NIIGESDPAVTTLNIFVPPVIAVMENKTPTEGSSLTLLCNITSNPVPSNNQVFWTKVDEMSFKVIGRTLSFQNINRQDTG IYSCNVNVSMVLNSGQWISKSATENVRIDVLYGPGDSMKISPDSDVTYYYENGRTNPVVCTAVCNPTCRIYWKDPYGNTL DGNTLRLGNASRSMNGTYTCIAENVIASLSYSSNTSIVIIVYYPPGTSISLTGSSRTINIIEGNDLADITCNAQCVPECS YNWIYPNGSSVPGRVLRLNKAARHMNGTYFCYAQNEIASEKHSSRIDVAVIVFYVAVNPYSVGYVRYYPDNSSSRDSHST TSGDGSNSSYFSILPM |
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