Gene
| Gene Model ID | pfu_aug1.0_1630.1_00776 |
|---|---|
| Locus | scaffold1630.1 : 22366 ... 37888 : + |
| To GenomeBrowser | scaffold1630.1:22366..37888 |
| Genes list of scaffold | scaffold1630.1 |
| Synonym | pfu_aug2.0_2256.1_22003 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1630.1_00776.t1 | 2 | 1 | Spt5_N | 49 | 75 | 5.5e-10 | 39.7 | 0.16 | 390.0 | 1.7 |
| pfu_aug1.0_1630.1_00776.t1 | 2 | 2 | Spt5_N | 82 | 174 | 5.5e-10 | 39.7 | 2.2e-13 | 5.5e-10 | 39.7 |
| pfu_aug1.0_1630.1_00776.t1 | 2 | 1 | KOW | 324 | 351 | 5.5e-09 | 35.3 | 0.0034 | 8.3 | 6.3 |
| pfu_aug1.0_1630.1_00776.t1 | 2 | 2 | KOW | 426 | 455 | 5.5e-09 | 35.3 | 1.3e-09 | 3.1e-06 | 26.6 |
| pfu_aug1.0_1630.1_00776.t1 | 2 | 1 | CTD | 474 | 502 | 1.3e-11 | 44.9 | 0.00083 | 2.0 | 8.8 |
| pfu_aug1.0_1630.1_00776.t1 | 2 | 2 | CTD | 495 | 607 | 1.3e-11 | 44.9 | 5.4e-15 | 1.3e-11 | 44.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1630.1_00776.t1 | gi|260820493|ref|XP_002605569.1| | hypothetical protein BRAFLDRAFT_282145 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1630.1_00776.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1630.1_00776.t1 atgagtcgcctgtcagaaaatcaatataaaggtgcacacagtgatgtaggtagtggtggtggtagtgacgcaggtagtga agctccaagtatacgctctagtggcagcaaacgaagaaataggaaacgcagaatcacagaagaagatgaagatgatctta ttgatgatgaagatgaatatgatgaagaagaagatgaggattatgatgacaggaagaggaggaagaaaccaaggcatgga ggatacattttagatgaagccgatgttgatgaggagggggatgaagatgaagaagactgggaagatggtgctgaagattt actggagacaaaatcttcatatgaaggaccaacagcaaaggaaatagaaagtaacagaagattagaacatctgttcacca cccagaaggaggatgagatagaggagtattacaagaagaagtatggcgattcctccgtggctgccaggtttggtgaggga gaggatatgtcagatgagatcactcagcaggggctgcttcctggtgtcaataagtctgaaaatattaccttcgttgtgtc aagtaagtctgaaagtattatcctcctggtgtcgagtaagtctgaaaatattatcctcctggtgttaagtaagtctgaaa atattacctttctggtgtcaagcaagtctaaaaatattacctttctggtgtcaagcaagtctgaaaatattacctttctg gtatcaagtaagtctgaaaatattatcctcctgttgtcgagtaagtctgaaaatattattctcctggtgtcaagcaagtc tgaaaatattatcctcctgatgttaagtaagtctgaaaatattacctacagtatctggtgtcaagcaagtctaaaaatat tacctttctggtgtcaaatggtgcccatcaaagagatgacggatgtattgcgtgtagtaaaggaagtggctacactgaag gccaaggcatgggtgagactaaagagaggtttatataaagatgacctggctcaagtggactacgtagaaccagctcagaa tatagtacacctgaaactcctaccaagaattgactatacccgcaagagaggcgtcctgaaatacccacaggattctgcca acaatgctggtctgacagtgacagggtttgctccaatgtcccccaggatatcaagccctgcccatcccagtggtggtgga gcagtgggggctgggaacatgactccagggaggggtagagggggtgggcttagtaaacgagatagagagctgattggtca aactgttagaattatacaaggacccttcaaaggttatattggtatagtaaaggatgccacagaatccacggctagagttg agcttcactccagctgtaaaaccatctctgtcgacagatctcgtcttagctctctacatggtggtcgtactacaggggtc cgtacagagtatgccacaccaggtcgcacacccacccacttgggatctcagactcctatgtatgggtcgaggacacctat gtatggttcccagactcctctccacgatggaagccgtacccctaactatggcagcatgacaccgtcacacgagcctggta gccggactccaggacagagtgcttgggatcccaccaaccctaatacacctacaaggttaaatgatttcaatgactatgag ttcaatgagaatccgtctcctgctgattacgcctccacacctaaccctacaacccctggataccaagctgacacacccag tcccctggggccattcacacctcaaacacctggtactagttactccccctactcacaaacatccccatcaccagcaggat ttagtggtaagtacatgtacatgtatgtatga |
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Protein
| Protein ID | pfu_aug1.0_1630.1_00776.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1630.1_00776.t1 MSRLSENQYKGAHSDVGSGGGSDAGSEAPSIRSSGSKRRNRKRRITEEDEDDLIDDEDEYDEEEDEDYDDRKRRKKPRHG GYILDEADVDEEGDEDEEDWEDGAEDLLETKSSYEGPTAKEIESNRRLEHLFTTQKEDEIEEYYKKKYGDSSVAARFGEG EDMSDEITQQGLLPGVNKSENITFVVSSKSESIILLVSSKSENIILLVLSKSENITFLVSSKSKNITFLVSSKSENITFL VSSKSENIILLLSSKSENIILLVSSKSENIILLMLSKSENITYSIWCQASLKILPFWCQMVPIKEMTDVLRVVKEVATLK AKAWVRLKRGLYKDDLAQVDYVEPAQNIVHLKLLPRIDYTRKRGVLKYPQDSANNAGLTVTGFAPMSPRISSPAHPSGGG AVGAGNMTPGRGRGGGLSKRDRELIGQTVRIIQGPFKGYIGIVKDATESTARVELHSSCKTISVDRSRLSSLHGGRTTGV RTEYATPGRTPTHLGSQTPMYGSRTPMYGSQTPLHDGSRTPNYGSMTPSHEPGSRTPGQSAWDPTNPNTPTRLNDFNDYE FNENPSPADYASTPNPTTPGYQADTPSPLGPFTPQTPGTSYSPYSQTSPSPAGFSGKYMYMYV |
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