Gene
| Gene Model ID | pfu_aug1.0_1632.1_66045 |
|---|---|
| Locus | scaffold1632.1 : 9716 ... 58331 : + |
| To GenomeBrowser | scaffold1632.1:9716..58331 |
| Genes list of scaffold | scaffold1632.1 |
| Synonym | pfu_aug2.0_52.1_06831 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1632.1_66045.t1 | 1 | 1 | FERM_N | 314 | 400 | 1.1e-15 | 57.3 | 1.8e-18 | 3.0e-15 | 56.0 |
| pfu_aug1.0_1632.1_66045.t1 | 1 | 1 | FERM_M | 405 | 507 | 3.9e-15 | 56.1 | 2.4e-18 | 3.9e-15 | 56.1 |
| pfu_aug1.0_1632.1_66045.t1 | 1 | 1 | FERM_C | 511 | 573 | 1.1e-06 | 28.6 | 2.0e-09 | 3.2e-06 | 27.2 |
| pfu_aug1.0_1632.1_66045.t1 | 3 | 1 | PDZ | 617 | 695 | 5.7e-31 | 106.5 | 1.8e-22 | 3.0e-19 | 68.9 |
| pfu_aug1.0_1632.1_66045.t1 | 2 | 1 | PDZ_2 | 626 | 707 | 6.3e-12 | 45.2 | 1.2e-09 | 2.0e-06 | 27.5 |
| pfu_aug1.0_1632.1_66045.t1 | 3 | 2 | PDZ | 896 | 963 | 5.7e-31 | 106.5 | 4.2e-09 | 6.9e-06 | 26.1 |
| pfu_aug1.0_1632.1_66045.t1 | 2 | 2 | PDZ_2 | 911 | 954 | 6.3e-12 | 45.2 | 1.3e-06 | 0.0022 | 17.8 |
| pfu_aug1.0_1632.1_66045.t1 | 3 | 3 | PDZ | 1165 | 1196 | 5.7e-31 | 106.5 | 4.2e-06 | 0.007 | 16.5 |
| pfu_aug1.0_1632.1_66045.t1 | 1 | 1 | Y_phosphatase | 1457 | 1685 | 0.0 | 233.6 | 0.0 | 0.0 | 233.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1632.1_66045.t1 | gi|260830920|ref|XP_002610408.1| | hypothetical protein BRAFLDRAFT_209294 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1632.1_66045.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1632.1_66045.t1 atggtcccctgggcttcgttatatacgaagtttactgtatttagccattacattcattgctcttctttttcttgtaaaat ttcagatttcagttcaaaggagaatgcctatggtctccctgatgacaaattgccaccatacacccagtacatgcagaaga tgtcagagataacagacacaggactctcatactatttgtctgatataaccaaccaccctgcaaaccaaaactatggtagt ctacccaggcagatgacccatagttacagtggcctatccaggcaggttgaccctagttacagtagcctatccaggtatag ggataataactttggtagtcttcccaggagtttggaccaaagttttgacagtcttactaggcagagggaaagttctcaac aatacaatcttaactttgaaacagggtcgtacatgggtcaaacagcttatgagaagtatgtgcgattgaaggaaaggcaa agaaaattgaaaatcctacggcatgagctactcggagatcagatgatcaatcgtcatgaattagctgatcatgccagagc agataccagatctttggtatccctaccaggttattcacaaggtttttacatgcctggactacatatgaggtatggatctg agacagcccttaaactaagactggagtcagacttagaaagcctggcaagtagtgagatgtctatggatcgttactcgaaa agggctggagatgttattcatacaccatcatcacagccacatgtccctttgtctgagaggctgaaaaaggccaagaatct catctcaaatagtaataatccaaccaaggagtattatggaccagaatttgtccacaagtccatgaagcccattgtgagag ttcctgtacctttacaaggagagagtttgaagaatccctcacttgcccgcagagtagtggttgttttactgactggccaa aagttagaggcctttgttgaccccagtactactggacatcagatgtttgaaagtattatcactcatgtagagcttcctga attcttcttctttgggctgtcatatatcagtcatggagaacatttctttttggagcccgacctgaagctacataagatat cacctgaaggttggagagatggtactaaaagtggagtggcggtgaccttcactctgtatctcagggtcaaattctaccca gaggatctgtctcttgtaaggcaccaagtgaccattcatcagttatatttacaactacgtcaggacatcgtagacgaacg tttatggtgtcatgaagaaagatgtgtagcattagcaggattagcactacaagcagagtatggcaattatgacagtgaaa tgatgggggaatattacttccaaacagaccactactttcccacaaatctgattaacgatttcggagctgaaaacttatac acaaaggcaatggggagccatattcaggcatctcagatgactgagagacatgcccagctagattttgtcaagagtaaaca ggacactagtagtgctgtgtggttgggaatcaagttgaagtgcatggttatagcagagagtcacaccctacacagagtta ttactcagcagtacccgtggcaagcggtacaaaaagtctccttcaacaaacgtcggttcagtatctctgtaaaaccagaa cttgctgccggccaaccaaagaaaatgaactacttcacaaacagcttcagaaatataactcatttcagagagagtcagaa gatgatcaagtgcttcctcagtataggcaatttatcagcagacagatttgacattctttcttcagaacatagtggcagct gtacatttcaagtagttctggagaaagagagagatgggggaatcggtattacaatcgtcggtggggattctgattatgga atatttataaaggatgtacgacctcacggccctgccgacgtagaggggacgctaaggaagggagataagatacttgccat tgacaatgtcagtatgaacaaaatggatcatgcggcagcagtccaaatgatccaaaattcaccacatcaagtgaaactgt tagtgtcccgtgttaacttagctagttctagcaaccagactttagacgtagctgatttccccagagatctcgacgaatct gatgctgataacgatcatgtacatactcatggttatgtatatactcaatcattacaaagtcatggacagaataatgttgt taaagaagaatttacaaaaaccaaaaacattccagaacagcatgctgcgtattaccagtctgaacagtcagttgatcatg ttagagctattccgtacatgagagaaatgacagaatcaacaatcaatgcagaaaaagacttcagcaatattacaaggaag agtaccagtcctaaagatagtgagaccagtgaaatcacaagttgtaacgacgaaaaacagtcagtaacgtccagtagccc caaaggtgacgaaaggcctctttatgaagttactctacaaaagaaggatggaacttttggactgaatatagcaatgccgt caaatgattataccttgattgatttaaaaccacaagctacactcaactcacattgctgcattgttattccgtcttttcga aatacagagttacttcccatttgtgcagagaatacttacagtgtagacataaggaaaggcagtagtggtttgggattcag cgtgtacgggggagtggacgtggacactgaagagcccacacagggtatcgtacgtattaaacaagtattccccatcggtc ctgcagcatccagtggtcaaattgaacgagatgatgtcatattagaagtcaatgatggaaatcagcagcagttgggtgaa accagtgaaatccagagtaaagctgaagtagaaaggaaggcagaatctcaggaagtaagtcaagagctttccttatcaga taagtatgaagaaaaagcagatggagaaattcagtatgcacaggaattagaccatgatataagtttgcccaatgaaaatg ttagtcttatcattagtcatggagataactctcaatatacagctaagacaaataaacctcttgaacaggcggcaagttgt gaaaattatgaggatatcggaaatgaaactgatgtgacaaattcagagtgggattataatagcatgaaagatcttcttgt tcagggacaaaatgacatacaaagtgacaagaaaggcattgaaagtgaaagtagatatgtagactctgaggatgacaaga aagacattgaaagtgaaagtagatatgtagactctgaggatgatcagacagattctgaatgtgataatgaaagtaggaga gacaaagatgatctgatagatttacaaagccatgaacactgtgattataaagataccagaagtgaaagtagatattcgga caccgaaaatgaacatcttgaacttgagaatgaacagaacatgagtgaacaagacaaaatagtgaatgaggaatcactag tagggcttacacatcccaaggctgtacagatgatcagaaaatccaaaggaaaagtatcattaacaatatcaagaatgtca tcaagaaatcttgatgtgataactccacctgtcataatgacagattcagaagatgacagttatgatgtagatcattcatc tgtctcaggtgatgattattatgatgaggaggaggaggaggagcatttttatggtgacagaatatcatttggtgaaagag acttgggtcctgaggagaacaaaaatgaagatatagatgaagaaggagatgaagatgttaatgaaagcatcattgactct gaagaagaagaaaatataaatgcatttgtgagagaagcagagaaacttctagcttcttcacagccctctgattttcactc ggatagctttatagagggtggtgggtctggaaacacaacatttattgaggcaggaaattggagtcacaactttgaagtag catatacagaggatagagagactgaggaaaatgacgcttggtcattcactgatgaatatgatagagataggcatgctgtg gagataccacaggaggaacttgggagagatcagatgtcaatgaagaaccagacatttactattgtcccatcacaaaggac cctgaatatagacataccagtgatgttaaacactgaatggctggaggccttaccttttttgttaccaggagaggaaatga tgtcagagttaccagggttactgagcagactacaacaacagacacagagagatgaccctgcagaggagtataaggagctg cggaacataaaaagcacagatgaatgtagcattgcgaaaaggcctgaaaacaagccttgtaacaggtttagaaatgtctt accatatgatgttaacagagtagagctaggaagaaatgctgattacattaatgctagtcatatcttgatgaatgttggtg ggtgtgaggctcacttcatcgctactcagggtcctaagcttgagacagcagaggatttctggcagatgatatgggagcaa aaggtatctgtgatagccatgctgacactggacgtagaaagtcagaaggtcaaatgtcatcgttactggcctgacttcca ggaaatacctatctatgtctgtgatgaaactttacgtataaagttgatctccgtggaatctgtaacggacatggatgtaa gaaagatttcattagaggatgtcaccaacaatgaatgtaggattgtgtatcatgtcaacttcacaacttggccagaccag ggagtaccaaagcctattactgttttacagtgtatacagttagtgcatgtgtaccacagtacaggacctgtattagtgca ttgtagtgcagggatagggaggacaggtacatttatcactatagatctcgccctcgctcaaatagagacaaatggaaagt gtgatatttttgagattgtccaggagttaagaaaacagcgctatggaatgattcagactaaggatcagtatacattatgt tacttggcttgcattgaagctatcgagagagctttgtcatatccatctatatctggaaaagaaacagaggaagcttga |
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Protein
| Protein ID | pfu_aug1.0_1632.1_66045.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1632.1_66045.t1 MVPWASLYTKFTVFSHYIHCSSFSCKISDFSSKENAYGLPDDKLPPYTQYMQKMSEITDTGLSYYLSDITNHPANQNYGS LPRQMTHSYSGLSRQVDPSYSSLSRYRDNNFGSLPRSLDQSFDSLTRQRESSQQYNLNFETGSYMGQTAYEKYVRLKERQ RKLKILRHELLGDQMINRHELADHARADTRSLVSLPGYSQGFYMPGLHMRYGSETALKLRLESDLESLASSEMSMDRYSK RAGDVIHTPSSQPHVPLSERLKKAKNLISNSNNPTKEYYGPEFVHKSMKPIVRVPVPLQGESLKNPSLARRVVVVLLTGQ KLEAFVDPSTTGHQMFESIITHVELPEFFFFGLSYISHGEHFFLEPDLKLHKISPEGWRDGTKSGVAVTFTLYLRVKFYP EDLSLVRHQVTIHQLYLQLRQDIVDERLWCHEERCVALAGLALQAEYGNYDSEMMGEYYFQTDHYFPTNLINDFGAENLY TKAMGSHIQASQMTERHAQLDFVKSKQDTSSAVWLGIKLKCMVIAESHTLHRVITQQYPWQAVQKVSFNKRRFSISVKPE LAAGQPKKMNYFTNSFRNITHFRESQKMIKCFLSIGNLSADRFDILSSEHSGSCTFQVVLEKERDGGIGITIVGGDSDYG IFIKDVRPHGPADVEGTLRKGDKILAIDNVSMNKMDHAAAVQMIQNSPHQVKLLVSRVNLASSSNQTLDVADFPRDLDES DADNDHVHTHGYVYTQSLQSHGQNNVVKEEFTKTKNIPEQHAAYYQSEQSVDHVRAIPYMREMTESTINAEKDFSNITRK STSPKDSETSEITSCNDEKQSVTSSSPKGDERPLYEVTLQKKDGTFGLNIAMPSNDYTLIDLKPQATLNSHCCIVIPSFR NTELLPICAENTYSVDIRKGSSGLGFSVYGGVDVDTEEPTQGIVRIKQVFPIGPAASSGQIERDDVILEVNDGNQQQLGE TSEIQSKAEVERKAESQEVSQELSLSDKYEEKADGEIQYAQELDHDISLPNENVSLIISHGDNSQYTAKTNKPLEQAASC ENYEDIGNETDVTNSEWDYNSMKDLLVQGQNDIQSDKKGIESESRYVDSEDDKKDIESESRYVDSEDDQTDSECDNESRR DKDDLIDLQSHEHCDYKDTRSESRYSDTENEHLELENEQNMSEQDKIVNEESLVGLTHPKAVQMIRKSKGKVSLTISRMS SRNLDVITPPVIMTDSEDDSYDVDHSSVSGDDYYDEEEEEEHFYGDRISFGERDLGPEENKNEDIDEEGDEDVNESIIDS EEEENINAFVREAEKLLASSQPSDFHSDSFIEGGGSGNTTFIEAGNWSHNFEVAYTEDRETEENDAWSFTDEYDRDRHAV EIPQEELGRDQMSMKNQTFTIVPSQRTLNIDIPVMLNTEWLEALPFLLPGEEMMSELPGLLSRLQQQTQRDDPAEEYKEL RNIKSTDECSIAKRPENKPCNRFRNVLPYDVNRVELGRNADYINASHILMNVGGCEAHFIATQGPKLETAEDFWQMIWEQ KVSVIAMLTLDVESQKVKCHRYWPDFQEIPIYVCDETLRIKLISVESVTDMDVRKISLEDVTNNECRIVYHVNFTTWPDQ GVPKPITVLQCIQLVHVYHSTGPVLVHCSAGIGRTGTFITIDLALAQIETNGKCDIFEIVQELRKQRYGMIQTKDQYTLC YLACIEAIERALSYPSISGKETEEA |
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