Gene
| Gene Model ID | pfu_aug1.0_1643.1_58611 |
|---|---|
| Locus | scaffold1643.1 : 2016 ... 22907 : + |
| To GenomeBrowser | scaffold1643.1:2016..22907 |
| Genes list of scaffold | scaffold1643.1 |
| Synonym | pfu_aug2.0_3480.1_02414 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | netrin-1 |
| Description | It is the best hit to EF384215.1 Platynereis dumerilii Netrin mRNA, partial cds |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1643.1_58611.t1 | 3 | 1 | Laminin_EGF | 35 | 47 | 2.2e-14 | 53.0 | 0.86 | 6400.0 | -2.9 |
| pfu_aug1.0_1643.1_58611.t1 | 2 | 1 | Laminin_N | 45 | 277 | 0.0 | 225.8 | 0.0 | 0.0 | 225.8 |
| pfu_aug1.0_1643.1_58611.t1 | 3 | 2 | Laminin_EGF | 279 | 325 | 2.2e-14 | 53.0 | 1.1e-11 | 7.9e-08 | 32.1 |
| pfu_aug1.0_1643.1_58611.t1 | 3 | 3 | Laminin_EGF | 335 | 395 | 2.2e-14 | 53.0 | 7.2e-12 | 5.3e-08 | 32.6 |
| pfu_aug1.0_1643.1_58611.t1 | 2 | 2 | Laminin_N | 361 | 388 | 0.0 | 225.8 | 0.17 | 1200.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1643.1_58611.t1 | gi|143347082|gb|ABO93214.1| | Netrin [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1643.1_58611.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1643.1_58611.t1 atgaagatgtaccttttctcggtatgtatgggatgtttagtccttgagagtttttcagcttccttcaacatgttttcagt ccaagaagttccaccagacccatgttatgacgaaggaggggaacctaaacagtgtattccggatttcgtcaacgctgctt tcggaaaggaagtgatttcatctagcacgtgcggctccccgccaagtagattttgtaagtctacgatagacaaggacaat cgtgtcatcagaaattgttttatttgtgatgctcagcaccctcaaagacagcatccaacgtcttatctcacagatttaaa taatcctaacgatttaacgtgctggatgtctaatacgtacgtacagtatccacaaaatgtgacgttaaaattagctttaa acaagaaatacgagttgacatacattagtttgcaattttgttcttcaagacccgattccatggctatattcaaaagtata gattacggaaaaacgtggataccattccaatattactctaaccattgcaagaaaatgtatggtaaatcacctagagcgat tgttaccaaagccaacgagcaggaggccctgtgtacggaatcctacagtaatatagagcctctgactggagccagggtgg cctttagcaccctagagggccgaccatcagcttatgatttcgagaatagtccgattctacaagactggataacggctaca gacatcatggtggtcttcaacaaactgaacacgtacaatgacgaaaacacggatgacgacggagcaagggaaagttacta ctactcactatccgatttcgctgtcggtggccgttgtaagtgtaacggccacgcatccaaatgttctgtaaatcgggagg gacagttcgtatgtgagtgcaagcacaatacagccggtaacgactgcgaaaaatgtaaaccattccatttcgaccgtcca tgggctcgggcaacatcagctgatgccaacgcgtgtgtggcttgcaattgtaaccttcatgccagacaatgccgcttcaa tatggagttgtaccgactttccgggaacaaatcgggaggagtgtgtataaagtgtcgtcataacactgccggccggaact gccattactgccgggaaggctactacagggactcctccaaacaaataacccacagaaaagcttgtaaagctaaatttagg gatgacatttctcatacaatgatctactgcgtcaccccgaagattcctgattatgaaatcatcggaatttgtcgggaaat tatgaaaatgtgcataacttttaaccggaagtactctattaggatgagggatcattaa |
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Protein
| Protein ID | pfu_aug1.0_1643.1_58611.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1643.1_58611.t1 MKMYLFSVCMGCLVLESFSASFNMFSVQEVPPDPCYDEGGEPKQCIPDFVNAAFGKEVISSSTCGSPPSRFCKSTIDKDN RVIRNCFICDAQHPQRQHPTSYLTDLNNPNDLTCWMSNTYVQYPQNVTLKLALNKKYELTYISLQFCSSRPDSMAIFKSI DYGKTWIPFQYYSNHCKKMYGKSPRAIVTKANEQEALCTESYSNIEPLTGARVAFSTLEGRPSAYDFENSPILQDWITAT DIMVVFNKLNTYNDENTDDDGARESYYYSLSDFAVGGRCKCNGHASKCSVNREGQFVCECKHNTAGNDCEKCKPFHFDRP WARATSADANACVACNCNLHARQCRFNMELYRLSGNKSGGVCIKCRHNTAGRNCHYCREGYYRDSSKQITHRKACKAKFR DDISHTMIYCVTPKIPDYEIIGICREIMKMCITFNRKYSIRMRDH |
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