Gene
Gene Model ID | pfu_aug1.0_1643.1_58611 |
---|---|
Locus | scaffold1643.1 : 2016 ... 22907 : + |
To GenomeBrowser | scaffold1643.1:2016..22907 |
Genes list of scaffold | scaffold1643.1 |
Synonym | pfu_aug2.0_3480.1_02414 |
Manual annotation
Study field | Biomineralization |
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Gene name | netrin-1 |
Description | It is the best hit to EF384215.1 Platynereis dumerilii Netrin mRNA, partial cds |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1643.1_58611.t1 | 3 | 1 | Laminin_EGF | 35 | 47 | 2.2e-14 | 53.0 | 0.86 | 6400.0 | -2.9 |
pfu_aug1.0_1643.1_58611.t1 | 2 | 1 | Laminin_N | 45 | 277 | 0.0 | 225.8 | 0.0 | 0.0 | 225.8 |
pfu_aug1.0_1643.1_58611.t1 | 3 | 2 | Laminin_EGF | 279 | 325 | 2.2e-14 | 53.0 | 1.1e-11 | 7.9e-08 | 32.1 |
pfu_aug1.0_1643.1_58611.t1 | 3 | 3 | Laminin_EGF | 335 | 395 | 2.2e-14 | 53.0 | 7.2e-12 | 5.3e-08 | 32.6 |
pfu_aug1.0_1643.1_58611.t1 | 2 | 2 | Laminin_N | 361 | 388 | 0.0 | 225.8 | 0.17 | 1200.0 | -1.9 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1643.1_58611.t1 | gi|143347082|gb|ABO93214.1| | Netrin [Platynereis dumerilii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_1643.1_58611.t1 |
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Definition | - |
>pfu_aug1.0_1643.1_58611.t1 atgaagatgtaccttttctcggtatgtatgggatgtttagtccttgagagtttttcagcttccttcaacatgttttcagt ccaagaagttccaccagacccatgttatgacgaaggaggggaacctaaacagtgtattccggatttcgtcaacgctgctt tcggaaaggaagtgatttcatctagcacgtgcggctccccgccaagtagattttgtaagtctacgatagacaaggacaat cgtgtcatcagaaattgttttatttgtgatgctcagcaccctcaaagacagcatccaacgtcttatctcacagatttaaa taatcctaacgatttaacgtgctggatgtctaatacgtacgtacagtatccacaaaatgtgacgttaaaattagctttaa acaagaaatacgagttgacatacattagtttgcaattttgttcttcaagacccgattccatggctatattcaaaagtata gattacggaaaaacgtggataccattccaatattactctaaccattgcaagaaaatgtatggtaaatcacctagagcgat tgttaccaaagccaacgagcaggaggccctgtgtacggaatcctacagtaatatagagcctctgactggagccagggtgg cctttagcaccctagagggccgaccatcagcttatgatttcgagaatagtccgattctacaagactggataacggctaca gacatcatggtggtcttcaacaaactgaacacgtacaatgacgaaaacacggatgacgacggagcaagggaaagttacta ctactcactatccgatttcgctgtcggtggccgttgtaagtgtaacggccacgcatccaaatgttctgtaaatcgggagg gacagttcgtatgtgagtgcaagcacaatacagccggtaacgactgcgaaaaatgtaaaccattccatttcgaccgtcca tgggctcgggcaacatcagctgatgccaacgcgtgtgtggcttgcaattgtaaccttcatgccagacaatgccgcttcaa tatggagttgtaccgactttccgggaacaaatcgggaggagtgtgtataaagtgtcgtcataacactgccggccggaact gccattactgccgggaaggctactacagggactcctccaaacaaataacccacagaaaagcttgtaaagctaaatttagg gatgacatttctcatacaatgatctactgcgtcaccccgaagattcctgattatgaaatcatcggaatttgtcgggaaat tatgaaaatgtgcataacttttaaccggaagtactctattaggatgagggatcattaa |
Protein
Protein ID | pfu_aug1.0_1643.1_58611.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1643.1_58611.t1 MKMYLFSVCMGCLVLESFSASFNMFSVQEVPPDPCYDEGGEPKQCIPDFVNAAFGKEVISSSTCGSPPSRFCKSTIDKDN RVIRNCFICDAQHPQRQHPTSYLTDLNNPNDLTCWMSNTYVQYPQNVTLKLALNKKYELTYISLQFCSSRPDSMAIFKSI DYGKTWIPFQYYSNHCKKMYGKSPRAIVTKANEQEALCTESYSNIEPLTGARVAFSTLEGRPSAYDFENSPILQDWITAT DIMVVFNKLNTYNDENTDDDGARESYYYSLSDFAVGGRCKCNGHASKCSVNREGQFVCECKHNTAGNDCEKCKPFHFDRP WARATSADANACVACNCNLHARQCRFNMELYRLSGNKSGGVCIKCRHNTAGRNCHYCREGYYRDSSKQITHRKACKAKFR DDISHTMIYCVTPKIPDYEIIGICREIMKMCITFNRKYSIRMRDH |