Gene
Gene Model ID | pfu_aug1.0_1643.1_58613 |
---|---|
Locus | scaffold1643.1 : 27066 ... 31067 : + |
To GenomeBrowser | scaffold1643.1:27066..31067 |
Genes list of scaffold | scaffold1643.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1643.1_58613.t1 | 1 | 1 | NTR | 2 | 75 | 3.4e-17 | 61.9 | 2.7e-21 | 4.0e-17 | 61.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1643.1_58613.t1 | gi|24158431|ref|NP_571104.1| | netrin-1 precursor [Danio rerio] | 6.0e-17 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_1643.1_58613.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1643.1_58613.t1 atgtacaaacgggatcccagacaaacaaggcgaggagaaacctacatctgggtacgattcaaagacttcaaatgtaaatg tcctaaatttagaaaagggaggagatatctgattgtcgggagacaccggaagaagcatcaacgtcctggctacgtcgccg atagaaaaacgattgtgattcgctggagggatcgatggcagcgccgccttcggagattcatgaaacacgaaaggagagga cattgtaatagttcgggtagaggaaaacggaagcgaaattga |
Protein
Protein ID | pfu_aug1.0_1643.1_58613.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1643.1_58613.t1 MYKRDPRQTRRGETYIWVRFKDFKCKCPKFRKGRRYLIVGRHRKKHQRPGYVADRKTIVIRWRDRWQRRLRRFMKHERRG HCNSSGRGKRKRN |