Gene
Gene Model ID | pfu_aug1.0_164384.1_28487 |
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Locus | scaffold164384.1 : 45 ... 883 : - |
To GenomeBrowser | scaffold164384.1:45..883 |
Genes list of scaffold | scaffold164384.1 |
Synonym | pfu_aug2.0_2882.1_09008 |
Manual annotation
Study field | Transcription Factors |
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Gene name | Pfu-HES4 |
Description | Best hit to EAW78058 hairy and enhancer of split 1, (Drosophila) by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. pfudtrochophorec02516g01236 was used for analyses. The predicted protein has WRPW motif in its C-terminus. |
mRNA evidence | pfudtrochophorec02516g01236 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_164384.1_28487.t1 | 1 | 1 | Hairy_orange | 20 | 60 | 1.0e-17 | 63.5 | 1.3e-21 | 2.0e-17 | 62.6 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_164384.1_28487.t1 | gi|47225756|emb|CAG08099.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 4.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_164384.1_28487.t1 |
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Definition | - |
>pfu_aug1.0_164384.1_28487.t1 cgcggcatacaaagacagcagctgtcctcggtaatcgcctcggaccctaacgtagtgtccaagtaccgagccgggtacca agaatgcgccaccgaggttactcgttatttgaattctaccagaaatgttgaaccagacgtcaaatccagacttgtgggac atttgagtgaatgtttacgcacacagtcaacatgtaacggacaatatcgcacatcaccgcatcatcaatccaacatagat gtcgccaccccattaagtgttcatattccacaaaacaattcaaacttttctcctgttgcgaattcaaatggacttttggt cgcaagtagtccgcaaatgcagcaaaaccaaaccacgtgtcaacccatgttatcagcatcgcctgtacacaacgtgcagc agacgacaaatgtttcaggacaatttcaaattcttcccgccagaaatgtgtacaatggaccaatcgcaatttacatgggc aatgtaaaccaatcaaattctccgtcacaaaattccattccagtttttaccttgcacgttccagagtcaaaggacgtttc gccttctcatgtagaaatttcgaaacaagcagacaatgcctatccttattctgggaagaatacagacagtgttatccggg cacgcgtacattatcacaatgaacgtgtttacaatgagaagttatggcgtccgtggtaa |
Protein
Protein ID | pfu_aug1.0_164384.1_28487.t1 |
---|---|
Definition | - |
>pfu_aug1.0_164384.1_28487.t1 RGIQRQQLSSVIASDPNVVSKYRAGYQECATEVTRYLNSTRNVEPDVKSRLVGHLSECLRTQSTCNGQYRTSPHHQSNID VATPLSVHIPQNNSNFSPVANSNGLLVASSPQMQQNQTTCQPMLSASPVHNVQQTTNVSGQFQILPARNVYNGPIAIYMG NVNQSNSPSQNSIPVFTLHVPESKDVSPSHVEISKQADNAYPYSGKNTDSVIRARVHYHNERVYNEKLWRPW |