Gene
| Gene Model ID | pfu_aug1.0_164384.1_28487 |
|---|---|
| Locus | scaffold164384.1 : 45 ... 883 : - |
| To GenomeBrowser | scaffold164384.1:45..883 |
| Genes list of scaffold | scaffold164384.1 |
| Synonym | pfu_aug2.0_2882.1_09008 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-HES4 |
| Description | Best hit to EAW78058 hairy and enhancer of split 1, (Drosophila) by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. pfudtrochophorec02516g01236 was used for analyses. The predicted protein has WRPW motif in its C-terminus. |
| mRNA evidence | pfudtrochophorec02516g01236 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_164384.1_28487.t1 | 1 | 1 | Hairy_orange | 20 | 60 | 1.0e-17 | 63.5 | 1.3e-21 | 2.0e-17 | 62.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_164384.1_28487.t1 | gi|47225756|emb|CAG08099.1| | unnamed protein product, partial [Tetraodon nigroviridis] | 4.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_164384.1_28487.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_164384.1_28487.t1 cgcggcatacaaagacagcagctgtcctcggtaatcgcctcggaccctaacgtagtgtccaagtaccgagccgggtacca agaatgcgccaccgaggttactcgttatttgaattctaccagaaatgttgaaccagacgtcaaatccagacttgtgggac atttgagtgaatgtttacgcacacagtcaacatgtaacggacaatatcgcacatcaccgcatcatcaatccaacatagat gtcgccaccccattaagtgttcatattccacaaaacaattcaaacttttctcctgttgcgaattcaaatggacttttggt cgcaagtagtccgcaaatgcagcaaaaccaaaccacgtgtcaacccatgttatcagcatcgcctgtacacaacgtgcagc agacgacaaatgtttcaggacaatttcaaattcttcccgccagaaatgtgtacaatggaccaatcgcaatttacatgggc aatgtaaaccaatcaaattctccgtcacaaaattccattccagtttttaccttgcacgttccagagtcaaaggacgtttc gccttctcatgtagaaatttcgaaacaagcagacaatgcctatccttattctgggaagaatacagacagtgttatccggg cacgcgtacattatcacaatgaacgtgtttacaatgagaagttatggcgtccgtggtaa |
|
Protein
| Protein ID | pfu_aug1.0_164384.1_28487.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_164384.1_28487.t1 RGIQRQQLSSVIASDPNVVSKYRAGYQECATEVTRYLNSTRNVEPDVKSRLVGHLSECLRTQSTCNGQYRTSPHHQSNID VATPLSVHIPQNNSNFSPVANSNGLLVASSPQMQQNQTTCQPMLSASPVHNVQQTTNVSGQFQILPARNVYNGPIAIYMG NVNQSNSPSQNSIPVFTLHVPESKDVSPSHVEISKQADNAYPYSGKNTDSVIRARVHYHNERVYNEKLWRPW |
|