Gene
| Gene Model ID | pfu_aug1.0_16478.1_68980 |
|---|---|
| Locus | scaffold16478.1 : 4882 ... 12745 : - |
| To GenomeBrowser | scaffold16478.1:4882..12745 |
| Genes list of scaffold | scaffold16478.1 |
| Synonym | pfu_aug2.0_214.1_13808 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16478.1_68980.t1 | 1 | 1 | RRM_1 | 31 | 75 | 5.9e-11 | 41.8 | 4.8e-14 | 1.4e-10 | 40.6 |
| pfu_aug1.0_16478.1_68980.t1 | 1 | 1 | RRM_5 | 44 | 76 | 1.4e-06 | 28.0 | 9.3e-10 | 2.8e-06 | 27.0 |
| pfu_aug1.0_16478.1_68980.t1 | 2 | 1 | CSTF2_hinge | 99 | 181 | 2.1e-32 | 111.0 | 7.1e-36 | 2.1e-32 | 111.0 |
| pfu_aug1.0_16478.1_68980.t1 | 2 | 1 | CSTF_C | 122 | 128 | 1.3e-18 | 65.9 | 0.7 | 2100.0 | -1.9 |
| pfu_aug1.0_16478.1_68980.t1 | 2 | 2 | CSTF_C | 358 | 399 | 1.3e-18 | 65.9 | 4.5e-22 | 1.3e-18 | 65.9 |
| pfu_aug1.0_16478.1_68980.t1 | 2 | 2 | CSTF2_hinge | 382 | 402 | 2.1e-32 | 111.0 | 0.83 | 2500.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16478.1_68980.t1 | gi|194332803|ref|NP_001123707.1| | cleavage stimulation factor subunit 2 [Xenopus (Silurana) tropicalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 2 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16478.1_68980.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16478.1_68980.t1 atgagttcccccaataatgtaacatcaatacagccaactgacccaatagaggggtgccgggtgcccaaacagaaagaaag aaggaaagatcatgtctgattagtatatgacagagagacaggtaagcctaaaggttatggcttctgtgagtaccaggacg tggaaacagctcaaagcgcgatgcgtaatctcaacaactatgattttaatggccgtcccctgagagtgggtgtggctgct ggagaacagaatagggatgaaatgaaaggactacaacaggccttaggtggcccagtgatggagagcccgtatggtgatcc tgtagaaccagagaaggcaccagaggccatatcaaaagccgtagctagtctccctcctgaacagatgtttgaactcatga aacaaatgaagatgtgtattcagaataaccctacagaggccaggaacatgctgttacagaatccacagttagcctacgct ctcttacaggctcaaattgtcatgaaaatcgtggatccacaagttgccatggcaatgttacacagagactctacacagat ccctcctgccagctctgccacgcctacttcaggagtcagccagccaataccagcctctgcacctcagcctatgcctgccc caggtcaaatgggaatgccaggtccccctaggagtcaggcacctggagccccagtccctatggggccagggccaagaatg ggagggccaggacctctaggtcttcaaccggacatgatggggccaagaggtccattgataggtccaggaccaggaatggg accccaggtgtcaggaccaggaccctctatgggaggaccacctatcagaccagacatgggtggaccagggcccagaccag acatcagagacccgcgtatgatgggaggggatgccaggcctatgggtccaaggcctgggatgccaccacaaagccaagca gcagggatactccctctggcagggggtatgccaagactccctgctaacctactgggacctggtggtctgactggaggttt acccaatgttactagtggagcccaaatctcagcccaggatcaagaaaaggctgccttgatcatgcaagtgttacagctaa cggaccagcagatagccatgttaccaccagaccagagacagagtatacttatactcaaggaccaaatatcaaaaagtgca actcagtga |
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Protein
| Protein ID | pfu_aug1.0_16478.1_68980.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16478.1_68980.t1 MSSPNNVTSIQPTDPIEGCRVPKQKERRKDHVXLVYDRETGKPKGYGFCEYQDVETAQSAMRNLNNYDFNGRPLRVGVAA GEQNRDEMKGLQQALGGPVMESPYGDPVEPEKAPEAISKAVASLPPEQMFELMKQMKMCIQNNPTEARNMLLQNPQLAYA LLQAQIVMKIVDPQVAMAMLHRDSTQIPPASSATPTSGVSQPIPASAPQPMPAPGQMGMPGPPRSQAPGAPVPMGPGPRM GGPGPLGLQPDMMGPRGPLIGPGPGMGPQVSGPGPSMGGPPIRPDMGGPGPRPDIRDPRMMGGDARPMGPRPGMPPQSQA AGILPLAGGMPRLPANLLGPGGLTGGLPNVTSGAQISAQDQEKAALIMQVLQLTDQQIAMLPPDQRQSILILKDQISKSA TQ |
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