Gene
| Gene Model ID | pfu_aug1.0_16490.1_46982 |
|---|---|
| Locus | scaffold16490.1 : 6696 ... 11764 : + |
| To GenomeBrowser | scaffold16490.1:6696..11764 |
| Genes list of scaffold | scaffold16490.1 |
| Synonym | pfu_aug2.0_593.1_10971 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16490.1_46982.t1 | 1 | 1 | GalKase_gal_bdg | 21 | 58 | 1.9e-17 | 62.2 | 5.7e-21 | 4.2e-17 | 61.1 |
| pfu_aug1.0_16490.1_46982.t1 | 2 | 1 | GHMP_kinases_N | 90 | 103 | 6.2e-11 | 42.2 | 0.066 | 490.0 | 0.8 |
| pfu_aug1.0_16490.1_46982.t1 | 2 | 2 | GHMP_kinases_N | 102 | 169 | 6.2e-11 | 42.2 | 3.6e-14 | 2.7e-10 | 40.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16490.1_46982.t1 | gi|260831607|ref|XP_002610750.1| | hypothetical protein BRAFLDRAFT_90953 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16490.1_46982.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16490.1_46982.t1 atggcagtaaacggagctacggcaatacccccagtgtcagaattagtgaccaccgcgtgtaaagccttcaaggacaagta tgggagggaccccaccacggccgcctgtgggccggggagggtcaacctgatcggggaacacacagattacaacgagggat tcgtattccccatgaaagaatcagagattcagaacacccctagctgtcaacttcacaaaaccgtgttgattctaccgact cggtggtctacagagggatattctatgaaagaaaagatcgggacgccaagtggatttgacgcagtggtggtgtcttcagt tccactcggaggtggcgtctccagttctgcctccatcgaagtggcgacatacacttttcttgacgccctgaatggaggag cggacaatgttttaaagaaagacaaagctctagcatgtcagaaagctgaacatgagtatgcaggcatgccatgtggaatt atggaccaattcatttctatgatgggcgaagatggacatgcgttgttaatcgactgcagatcagtagagagcaccctggt ccccatgaaagacccaaacgtcgttgtcctggtaaccaactctaacgtcaaacacgaactgaccggttcggagtacccca ccagacggaaacagtgtgagaccgcagcgtccctgctaggtaaacgtagcctgagagaggccaccgacaaagacctagaa gattctaaggacaaacttgacaacgttacatatcgccgagctcgtcacgtgattggagagatcaaaaggacggaggaagc agccaactgccttcagaacggagattatgtgaagtttgggaagctgatggtggcaagtcatgatgctcttaggtga |
|
Protein
| Protein ID | pfu_aug1.0_16490.1_46982.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16490.1_46982.t1 MAVNGATAIPPVSELVTTACKAFKDKYGRDPTTAACGPGRVNLIGEHTDYNEGFVFPMKESEIQNTPSCQLHKTVLILPT RWSTEGYSMKEKIGTPSGFDAVVVSSVPLGGGVSSSASIEVATYTFLDALNGGADNVLKKDKALACQKAEHEYAGMPCGI MDQFISMMGEDGHALLIDCRSVESTLVPMKDPNVVVLVTNSNVKHELTGSEYPTRRKQCETAASLLGKRSLREATDKDLE DSKDKLDNVTYRRARHVIGEIKRTEEAANCLQNGDYVKFGKLMVASHDALR |
|