Gene
| Gene Model ID | pfu_aug1.0_165.1_14835 |
|---|---|
| Locus | scaffold165.1 : 100822 ... 110585 : - |
| To GenomeBrowser | scaffold165.1:100822..110585 |
| Genes list of scaffold | scaffold165.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_165.1_14835.t1 | 1 | 1 | RRM_6 | 57 | 114 | 3.0e-07 | 30.2 | 1.2e-10 | 4.5e-07 | 29.7 |
| pfu_aug1.0_165.1_14835.t1 | 1 | 1 | RRM_1 | 59 | 108 | 4.6e-06 | 26.1 | 1.9e-09 | 7.1e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_165.1_14835.t1 | gi|4929470|gb|AAD34009.1|AF148690_1 | RNA-binding protein XlhnRNPL [Xenopus laevis] | 2.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_165.1_14835.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_165.1_14835.t1 atgaatggtcagtgcgccctatcggtgaaatttgtacaacaagggcagacaactcctaccgaaggcaagagaatggcgtc gggttacgacggacacatttcaaaacgtcaaagaacggataattccgacagggatgatgatcgtatcaacccggccccgt cccctgtcgtacatgtcagaggtttgacggatttggtaacggagggaaatctcatgcaagctgtgcaacactttggtgtt gtcagctatgtcatgatgatgtcaaggaagcatatggcccttatagaattcgagaacatcacaggggcacgtaattgcgt agagtattcacagcacaatcaaatctttgtcggagaccacccagctttctttaattactcaacaagttccaagattcaac gaccaaggtacttgtatacatgtatttcaactgactcatag |
|
Protein
| Protein ID | pfu_aug1.0_165.1_14835.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_165.1_14835.t1 MNGQCALSVKFVQQGQTTPTEGKRMASGYDGHISKRQRTDNSDRDDDRINPAPSPVVHVRGLTDLVTEGNLMQAVQHFGV VSYVMMMSRKHMALIEFENITGARNCVEYSQHNQIFVGDHPAFFNYSTSSKIQRPRYLYTCISTDS |
|