Gene
| Gene Model ID | pfu_aug1.0_16525.1_46995 |
|---|---|
| Locus | scaffold16525.1 : 2308 ... 12116 : - |
| To GenomeBrowser | scaffold16525.1:2308..12116 |
| Genes list of scaffold | scaffold16525.1 |
| Synonym | pfu_aug2.0_127.1_23530 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16525.1_46995.t1 | 1 | 1 | DUF1395 | 31 | 159 | 2.20004e-41 | 141.9 | 2.8026e-45 | 2.4e-41 | 141.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16525.1_46995.t1 | gi|348523427|ref|XP_003449225.1| | PREDICTED: spindle and kinetochore-associated protein 1-like isoform X1 [Oreochromis niloticus] | 5.0e-30 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_16525.1_46995.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16525.1_46995.t1 agaaaaaacatcagaaaaagtacatgtagatgacaactcctatcctccccagccattagtggaagtagcaaagaaatcag gggaaacaactacagcacagagcaagaaacaaaagatgtcaaaatctgtatatgtaccctccatggagtatatcacagtg gatgactttgattcagtaccaaagtatatgaagggaaggatcacttataacaatgtcaataatgccattgatgaactgaa taaagcttacaaagagaagtacaaaatcctgggtatgaagccttcccaacttaatgatgtcaataggaaaagatatgaga cgtataaacagctggaaaccaaggatactgtagcggaatatttcatagtggacggagatataaaggaattttgtaacttt aagctggacagagtgggacgtaatgttttaacgatactcagacactgtggccgtatgaaagaaatcaggggtaacggacg cacacgttacgccatagtacatgtgtactga |
|
Protein
| Protein ID | pfu_aug1.0_16525.1_46995.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16525.1_46995.t1 EKTSEKVHVDDNSYPPQPLVEVAKKSGETTTAQSKKQKMSKSVYVPSMEYITVDDFDSVPKYMKGRITYNNVNNAIDELN KAYKEKYKILGMKPSQLNDVNRKRYETYKQLETKDTVAEYFIVDGDIKEFCNFKLDRVGRNVLTILRHCGRMKEIRGNGR TRYAIVHVY |
|