Gene
| Gene Model ID | pfu_aug1.0_16539.1_68981 |
|---|---|
| Locus | scaffold16539.1 : 3546 ... 29534 : + |
| To GenomeBrowser | scaffold16539.1:3546..29534 |
| Genes list of scaffold | scaffold16539.1 |
| Synonym | pfu_aug2.0_56.1_20133 |
Manual annotation
| Study field | signal molecules |
|---|---|
| Gene name | ADAM10-like |
| Description | BLASTP hit to XP_003486941 PREDICTED: disintegrin and metalloproteinase domain-containing protein 10-like [Bombus impatiens] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16539.1_68981.t1 | 1 | 1 | Pep_M12B_propep | 30 | 96 | 8.2e-06 | 25.6 | 1.1e-08 | 1.6e-05 | 24.6 |
| pfu_aug1.0_16539.1_68981.t1 | 1 | 1 | Reprolysin_5 | 166 | 395 | 4.2e-27 | 95.3 | 5.9e-30 | 8.8e-27 | 94.3 |
| pfu_aug1.0_16539.1_68981.t1 | 1 | 1 | Reprolysin_4 | 194 | 409 | 3.3e-20 | 72.5 | 3.5e-23 | 5.2e-20 | 71.8 |
| pfu_aug1.0_16539.1_68981.t1 | 1 | 1 | Reprolysin_2 | 195 | 414 | 3.6e-28 | 98.7 | 2.4e-31 | 3.6e-28 | 98.7 |
| pfu_aug1.0_16539.1_68981.t1 | 1 | 1 | Reprolysin_3 | 228 | 364 | 7.3e-16 | 58.8 | 1.3e-18 | 1.9e-15 | 57.4 |
| pfu_aug1.0_16539.1_68981.t1 | 1 | 1 | Reprolysin | 334 | 416 | 2.3e-06 | 27.3 | 5.8e-08 | 8.6e-05 | 22.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16539.1_68981.t1 | gi|350403899|ref|XP_003486941.1| | PREDICTED: disintegrin and metalloproteinase domain-containing protein 10 isoform X2 [Bombus impatiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_16539.1_68981.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16539.1_68981.t1 atggacatagacatggactttgagcaaaaagcattagacgactacatccgtcattacgaggagttatcatacgacacatc agatctccatgaacgtcatatacgtgctaaacgatcaactagtgataaaagcctatcattgaaattcaaagctcatggaa gagatttccatcttgatctcaagccttgcaaatccatttttactccagaccacaaattgcgtcataataatgggacagaa gaaaatatagatacgtcatttatatatgatggtgtcgtagtcggtagacacaagaggggcccaagtaattttcctggaac ttgtgccaacgatgaacacttacaatggatgcagaaggtgtcggagtctgccatcccccagaacagagccatgcggactg agtatgaagatggttaccataataagtattctgccgaagctaatgagtattctcaccgtcagaaacgatccacggggagc tgtaacatcggcacaaagaatacctgctatctctatctcagatctgatccattgcttttcaacaaactgaaagaaggcgt aggagatattgcagctcgtgatgagataattgccttttttgcgagtcatgtggatgcaatatcgaaaatatacagaaaca cagtgtttgaaacatataacagtgcaggaagccccccttgctacaccaatattcaatttgaagtgaaaagaaccagtatc atgacagatgagacagagaattgtaataatcaacttcagaagtcgtcattctgtaatcctaacattgacgtcagtaactt cctgaacctgaactccctgcagaatcacagcgatttctgtctggcttatatctttacgtacagagacttcacgcagggaa ctctgggactggcctgggtgggatccccgtccagaaatgctggaggtatatgtgaaaagtggaaacagtatacagagggc tctcagcaggtgtataagagtcttaacactggcatagttactatagttaactacggtaaacgtgtggcacccagagtttc tcagcttacatttgctcatgaagttggtcataactttggatcaccccatgacagtggtcaacaatgtgcgccctatggta ccagccaacccaatgccaaccagggtaactacattatgtttgccagtgctacacaaggaaacagggaacataatgatgag ttctctgtatgcagtaaggataatatgaccagagtcattcaggctgttactggtcaaagtaatggcaaagtcaattgttt tgaggaaataaaaacaaatggcacctgtattacttcaaagagcaatgatttatctacatatccagaatttaataatgtag tgactgcagcagctgatggtcaggagggagtgaagcttcctgcaggttctccgtgtaatgattaccaaggatactgtgat gtgttccatcgttgccgtggtgtcgacaatgaagggccactccaacgtctcaaaaacctattgtttagtgaagaaacctt tacaacaattaaaaactggatcatagaacattggtgggccgttatgttaatggctataggtcttatattagccatgggat tatttatcaaattctgtgctgtacatacacctagctcaaaccccaatgccaagccggcattacgacttacagatacatta cgtcgcaggcgacgacctccaccacagcaaaattatatgccgattcacagaatggaattcctttga |
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Protein
| Protein ID | pfu_aug1.0_16539.1_68981.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16539.1_68981.t1 MDIDMDFEQKALDDYIRHYEELSYDTSDLHERHIRAKRSTSDKSLSLKFKAHGRDFHLDLKPCKSIFTPDHKLRHNNGTE ENIDTSFIYDGVVVGRHKRGPSNFPGTCANDEHLQWMQKVSESAIPQNRAMRTEYEDGYHNKYSAEANEYSHRQKRSTGS CNIGTKNTCYLYLRSDPLLFNKLKEGVGDIAARDEIIAFFASHVDAISKIYRNTVFETYNSAGSPPCYTNIQFEVKRTSI MTDETENCNNQLQKSSFCNPNIDVSNFLNLNSLQNHSDFCLAYIFTYRDFTQGTLGLAWVGSPSRNAGGICEKWKQYTEG SQQVYKSLNTGIVTIVNYGKRVAPRVSQLTFAHEVGHNFGSPHDSGQQCAPYGTSQPNANQGNYIMFASATQGNREHNDE FSVCSKDNMTRVIQAVTGQSNGKVNCFEEIKTNGTCITSKSNDLSTYPEFNNVVTAAADGQEGVKLPAGSPCNDYQGYCD VFHRCRGVDNEGPLQRLKNLLFSEETFTTIKNWIIEHWWAVMLMAIGLILAMGLFIKFCAVHTPSSNPNAKPALRLTDTL RRRRRPPPQQNYMPIHRMEFL |
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