Gene
| Gene Model ID | pfu_aug1.0_16548.1_10933 |
|---|---|
| Locus | scaffold16548.1 : 6979 ... 11859 : - |
| To GenomeBrowser | scaffold16548.1:6979..11859 |
| Genes list of scaffold | scaffold16548.1 |
| Synonym | pfu_aug2.0_672.1_07780 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Hsp70 |
| Description | reciprocal BLASTP best hit to NCBI Acession EU822509 the CDS also exist in pfu_aug1.0_42389.1_55852.t1, pfu_aug1.0_1062.1_51192.t2, pfu_aug1.0_1062.1_51192.t1, pfu_aug1.0_1030.1_65743.t1, pfu_aug1.0_4126.1_37802.t1 |
| mRNA evidence |
| Study field | Environmental Response |
|---|---|
| Gene name | Heat Shock Protein |
| Description | It is the best hit to EU822509.1 Pinctada fucata heat shock protein 70 mRNA, complete |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16548.1_10933.t1 | 2 | 1 | HSP70 | 6 | 431 | 0.0 | 787.9 | 0.0 | 0.0 | 705.3 |
| pfu_aug1.0_16548.1_10933.t1 | 2 | 1 | MreB_Mbl | 6 | 57 | 3.0e-17 | 62.2 | 0.011 | 23.0 | 3.4 |
| pfu_aug1.0_16548.1_10933.t1 | 2 | 2 | MreB_Mbl | 133 | 374 | 3.0e-17 | 62.2 | 6.9e-19 | 1.5e-15 | 56.6 |
| pfu_aug1.0_16548.1_10933.t1 | 2 | 2 | HSP70 | 430 | 565 | 0.0 | 787.9 | 2.5e-29 | 5.3e-26 | 90.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16548.1_10933.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16548.1_10933.t1 atgagtaaaggacccgccatcggaattgatcttggcactacatattcctgcgtaggtgtatttcagcatggtaaagtaga aatcatcgctaacgaccagggtaatcgtaccacacctagctatgtagccttcacagataccgagagactgatcggagatg ctgccaaaaaccaggtggccatgaacccatcaaatactatctttgatgcaaagcgtctgattggcagaaagtttgacgat ccaaatgtacaggcagatatgaaacactggccattcacagtcgttaatgagtcctccaaaccacgtatcaaagtagatta caagggagagaacaagacattcttggctgaggagatctcgtcaatggtccttactaaaatgaaggagactgctgaagctt acctaggaaaaacaataaacaatgctgtagtgacggtaccagcgtacttcaatgattcccagagacaggctaccaaagat gccggcacaatcgctggtcttaatgttctacgtatcatcaatgaacccacagcagctgctatcgcctatggtctggacaa gaaggttggcggagagcgtaacgttctgatctttgacttgggaggaggaacctttgatgtatccatcttgacaatagagg acggtatttttgaggtaaaatccacgtctggcgacacccatcttggaggcgaggactttgacaacagaatggtgaatcac tttatccaagaattcaaacgtaaacacaaaaaagacatttccgaaaacaaacgagcagtaagacgtcttcgtaccgcatg cgagagggcaaagcgaaccttatcgtccagtactcaggctagcgtagagattgactctttgtttgagggtatagatttct acaccagtattaccagagctaggtttgaggagttgaacgccgatctcttcagagggaccctacagcctgtagagaaatca ataatagacgccaagatggacaaaggtcaaattcacgatatcgtcctggttggaggctctaccagaattcccaaaatcca aaaactgctgcaagatttcttcaacggcaaggaactgaacaaatccatcaaccctgacgaagctgtagcctatggtgcag cggtacaggcagcaattttgtctggagacaaatcagaggaagtgcaggatctcctcctgttggacgttgccccgctttcc ctcggtatcgagacagccggcggtgtgatgacgtcgctcatcaagaggaacacgacaatccccaccaagcagacacagac cttcaccacttactncatcgatgctaacggtatcatgaacgtccaggccacggataagagcaccggcaaggaaaacaaaa tcacaatcaccaatgacaaaggtcgcctcagcaaagatgaaatcgataggatgttaagcgaagccgaaaagtacaaacag gaagacgaaaaacaaaaagatcgtatcacggccaagaacagtctggaaagctacgcattcaacatgaaatccacggtgga agacgaaaaactcaaagacaagatcgaggagggtgataaaaataaaatcaaggaaaagtgcgatgaaatcatcaagtggt tagacaccaatcaactcgctgaaaaggaggagtttgaagacaaacagaaagaactagagaaggaatgtaatcccatcata accaagctgtaccaggcagcaggtggtgctcccggtggagccccagggggtatgccaccaaactttggtggtgctgcccc aggaggtggaagcgaaggtggatccagtggtggacctaccatcgaggaggtcgattaa |
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Protein
| Protein ID | pfu_aug1.0_16548.1_10933.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16548.1_10933.t1 MSKGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPSNTIFDAKRLIGRKFDD PNVQADMKHWPFTVVNESSKPRIKVDYKGENKTFLAEEISSMVLTKMKETAEAYLGKTINNAVVTVPAYFNDSQRQATKD AGTIAGLNVLRIINEPTAAAIAYGLDKKVGGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTSGDTHLGGEDFDNRMVNH FIQEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASVEIDSLFEGIDFYTSITRARFEELNADLFRGTLQPVEKS IIDAKMDKGQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSEEVQDLLLLDVAPLS LGIETAGGVMTSLIKRNTTIPTKQTQTFTTYXIDANGIMNVQATDKSTGKENKITITNDKGRLSKDEIDRMLSEAEKYKQ EDEKQKDRITAKNSLESYAFNMKSTVEDEKLKDKIEEGDKNKIKEKCDEIIKWLDTNQLAEKEEFEDKQKELEKECNPII TKLYQAAGGAPGGAPGGMPPNFGGAAPGGGSEGGSSGGPTIEEVD |
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